View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_13 (Length: 343)
Name: NF17577_high_13
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 44722769 - 44723018
Alignment:
| Q |
17 |
atagaaaaaagaaaagtgttactttacgaaaacaataagataggcattattaattaacagaaatcaattttgttttccatttcttcttctttttatatgt |
116 |
Q |
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| T |
44722769 |
atagaaaaaagaaaagtgttactttacgaaaacaataagataggcattattaattaacacaaatcaattttgttttccatttcttcttctttttatatgt |
44722868 |
T |
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| Q |
117 |
aaaataaaaaatggaaacagaggaggactttactagtatctcccttggaggaagggtaaagaccaattatttttgtgcttactagtatcagttgaccaaa |
216 |
Q |
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| T |
44722869 |
aaaataaaaaatggaaacagaggaggactttactagtatctcccttggaggaagggtaaagaccaattatttttgtgcttactagtatcagttgaccaaa |
44722968 |
T |
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| Q |
217 |
accttattatttgatatcatgttttactacatagaatagaatagagcaggc |
267 |
Q |
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| T |
44722969 |
accttatta-ttgatatcatgttttactacatagaatagaatagagcaggc |
44723018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 328
Target Start/End: Original strand, 44723047 - 44723079
Alignment:
| Q |
296 |
caattggctaatagtggtatcaaggttcttact |
328 |
Q |
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| T |
44723047 |
caattggctaatagtggtatcaaggttcttact |
44723079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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