View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_14 (Length: 341)
Name: NF17577_high_14
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_14 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 325
Target Start/End: Complemental strand, 32569416 - 32569102
Alignment:
| Q |
11 |
atgaagtaaatctaaaagtttcttctagatcatattatgaatagtagaaagcatgaataatgaataactgtctatatgcttatgttaatttgataattta |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32569416 |
atgaagtaaatctaaaagtttcttctagatcatattatgaatagtagaaagcatgaataatgaataactgtctatatgcttatattaatttgataattta |
32569317 |
T |
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| Q |
111 |
atcatttaatgcattagtacaaaatgttgacattgatgagagttgcagacttaaaatttcttatgtattccatttccaacagatgtattccgtatagatg |
210 |
Q |
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| T |
32569316 |
atcatttaatgcattagtacaaaatgttgacattgatgagagttgcagacttaaaatttcttatgtattccatttccaacagatgtattccgtatagatg |
32569217 |
T |
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| Q |
211 |
gagaaaagagaatgcggatcagaatggagaaactgaagaaatagtagaagtacttatggtttcttcacctaaacgagacgaccttgtatttccaaaggta |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32569216 |
gagaaaagagaatgcggatcagaatggagaaactgaagaaatagtagaagtacttatggtttcttcacctaaacgagacgaccttgtatttccaaaggta |
32569117 |
T |
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| Q |
311 |
ctttgatattgtctg |
325 |
Q |
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| T |
32569116 |
ctttgatattgtctg |
32569102 |
T |
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Target: scaffold0001 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 263 - 325
Target Start/End: Original strand, 4560 - 4622
Alignment:
| Q |
263 |
cttatggtttcttcacctaaacgagacgaccttgtatttccaaaggtactttgatattgtctg |
325 |
Q |
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| T |
4560 |
cttatggtttcttcaccaaaacgagacgaccttgtatttccaaaggtactttgatattgtctg |
4622 |
T |
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