View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_16 (Length: 317)
Name: NF17577_high_16
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 10 - 317
Target Start/End: Original strand, 38296675 - 38296977
Alignment:
| Q |
10 |
ataatactttcattgaagttaacgggtgaagaaagagtggaactttttacgttaaaacttacaacctggaaccaataagttttacttacttataaaacat |
109 |
Q |
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| T |
38296675 |
ataacactttcattgaagttaacgggtgaagaaagagtggaactttttacgttaaaacttacaacctggaaccaataagttttacttacttataaaacat |
38296774 |
T |
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| Q |
110 |
taataaagggaggttgggtagtttaaggatttgagttaagcgttgaaagggtctgatgagttaaatgatcaaaattcannnnnnnnnnnnnnncaaagat |
209 |
Q |
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| T |
38296775 |
taataaagggaggttgggtagtttaaggatttgagttaagcgttgaaagggtctgatgagttaaatgatcaaaattca------tttttttttcaaagat |
38296868 |
T |
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| Q |
210 |
caaaatttacatcttggtgaaag-----nnnnnnnnntactacattaacatttatctatcttctctcaaataaaacacatttatctgtcaaaaaatatct |
304 |
Q |
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| T |
38296869 |
caaaatttacatcttggtgaaagaaaaaaaaaaaaaatactacattaacatttatctatcttctctc----aaaacacatttatctatcaaaaaatatct |
38296964 |
T |
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| Q |
305 |
atccaaaataaaa |
317 |
Q |
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| T |
38296965 |
atccaaaataaaa |
38296977 |
T |
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