View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_18 (Length: 297)
Name: NF17577_high_18
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 17 - 280
Target Start/End: Complemental strand, 14175086 - 14174823
Alignment:
| Q |
17 |
agacaaagagcacaagcaaatttctatccaccatgtcctgatccagaattgaccatgggactgcttgaacatactgatctcaatgctatcacagtcctat |
116 |
Q |
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| T |
14175086 |
agacaaagagcacaagcaaatttctatccaccatgtcctgatccagaattgaccatgggactgcttgaacatactgatctcaatgctatcacagtcctat |
14174987 |
T |
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| Q |
117 |
tgcaatcagaagtatctggtcttcaagttaacaaagatggaaaatggatttctgttccttgtattcccaatgcttttgtcatcaatcttgctgatcaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
14174986 |
tgcaatcagaagtatctggtcttcaagttaacaaagatggaaaatggatttctgttccttgtattcccaatgcttttgtcatcaatttagctgatcaaat |
14174887 |
T |
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| Q |
217 |
tgaggtatgtgtcattggtcaaccaagtcataaatcctagatatgccaacactttctctaatgt |
280 |
Q |
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| T |
14174886 |
tgaggtatgtgtcattggtcaaccaagtcataaatcctagatataccaacactttctctaatgt |
14174823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 14171689 - 14171471
Alignment:
| Q |
17 |
agacaaagagcacaagcaaatttctatccaccatgtcctgatccagaattgaccatgggactgcttgaacatactgatctcaatgctatcacagtcctat |
116 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||| ||||||| || | |
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| T |
14171689 |
agacaaagagcacaatcaaatttctatccaccatgtcctgatccagaattgaccatgggtctcaatgaacatactgatcttaatgctctcacagttcttt |
14171590 |
T |
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| Q |
117 |
tgcaatcagaagtatctggtcttcaagttaacaaagatggaaaatggatttctgttccttgtattcccaatgcttttgtcatcaatcttgctgatcaaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
14171589 |
tgcaatcagaagtatctggtcttcaagttaacaaagatgggaaatggatttctattccttgtattcccaatgcttttgtcatcaatttagctgatcaaat |
14171490 |
T |
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| Q |
217 |
tgaggtatgtgtcattggt |
235 |
Q |
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| T |
14171489 |
tgaggtatgtgtcattggt |
14171471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 17 - 227
Target Start/End: Complemental strand, 14179391 - 14179181
Alignment:
| Q |
17 |
agacaaagagcacaagcaaatttctatccaccatgtcctgatccagaattgaccatgggactgcttgaacatactgatctcaatgctatcacagtcctat |
116 |
Q |
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|||||||||||||| ||||||||||||||||||||| | ||||||| ||||| ||||| || ||||||||||||| |||||||| |||||||||||| |
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| T |
14179391 |
agacaaagagcacaggcaaatttctatccaccatgttcaaatccagagttgactatgggtctcactgaacatactgatatcaatgctctcacagtcctat |
14179292 |
T |
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| Q |
117 |
tgcaatcagaagtatctggtcttcaagttaacaaagatggaaaatggatttctgttccttgtattcccaatgcttttgtcatcaatcttgctgatcaaat |
216 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
14179291 |
tgcaatcagaagtttctggtcttcaagttaacaaagatggaaaatggatttctattccttgtattcccaatgcttttgtcatcaatctagctgatcaaat |
14179192 |
T |
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| Q |
217 |
tgaggtatgtg |
227 |
Q |
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||||||||||| |
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| T |
14179191 |
tgaggtatgtg |
14179181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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