View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17577_high_2 (Length: 757)

Name: NF17577_high_2
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17577_high_2
NF17577_high_2
[»] chr1 (1 HSPs)
chr1 (9-741)||(39998798-39999530)


Alignment Details
Target: chr1 (Bit Score: 697; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 9 - 741
Target Start/End: Complemental strand, 39999530 - 39998798
Alignment:
Q  9 agcagagacatgctgtagggttttttccataataatgtcattggcccgagggcaggaatgctggtagaagttcttcctcaggatgcctccttgacaagtc 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||    
T  39999530 agcagagacatactgtagggttttttccataataatgtcattggcctgagggcaggaatgctggtagaagttcttccccaggatgcctccttgacaaatc 39999431  T
Q  109 acaacgaaacttaaaagaaccatgcaaggcactagtgaaaatctgttcgtattcaaaggggagaatgaatgctgaactagaaggacatcccatcctttta 208  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999430 acaacgaaacttaaaagtaccatgcaaggcactagtgaaaatctgttcgtattcaaaggggagaatgaatgctgaactagaaggacatcccatcctttta 39999331  T
Q  209 tagtatcatatttccatatagtcaaatagcaatggcattacttcatttaaattttatgggaaaggttagtttcaaattatgtcctaaacttttttatcag 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39999330 tagtatcatatttccatatagtcaaatagcaatggcattacttcatttaaattttatgggaaagattagtttcaaattatgtcctaaacttttttatcag 39999231  T
Q  309 taagaatcaaatttgctatccgagttttacaacactcatacaccatgtgtaccaattatttgcgctagacctcaatagcatgcatgccctactatttttt 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39999230 taagaatcaaatttgctatccgagttttacaacactcatacaccatgtgtaccaattatttgcgctagacctcaatagcatgcatgtcctactatttttt 39999131  T
Q  409 cataataaaaaagtctagggtgaggggcactccagtcctgccctttacaaacataaaattaatttattcttcaaccagctaattcaatgtgcctgaaata 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999130 cataataaaaaagtctagggtgaggggcactccagtcctgccctttacaaacataaaattaatttattcttcaaccagctaattcaatgtgcctgaaata 39999031  T
Q  509 aatttaggatgaggggaagatgcaccagtataaggtaggaaagacctttgcccttaaagagcacttccaatcttcaaaggtataactgactcaaatctga 608  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39999030 aatttaggatgaggggacgatgcaccagtataaggtaggaaagacctttgcccttaaagagcacttccaatcttcaaaggtataactgactcaaatctga 39998931  T
Q  609 aacctccggatccaagacatgtcattttacattttaccaccaaacctaactcttggagtttgttgctcttagtctgggataggtatctgcttagacataa 708  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39998930 aacctccggatccaagacctgtcattttacattttaccaccaaacctaactcttggagtttgttgctcttagtctgggataggtatctgcttagacataa 39998831  T
Q  709 ctgatattaaccttcatattgtagtgatagcac 741  Q
    |||||||||||||||||||||||||||||||||    
T  39998830 ctgatattaaccttcatattgtagtgatagcac 39998798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University