View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_22 (Length: 245)
Name: NF17577_high_22
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 11 - 232
Target Start/End: Original strand, 28505775 - 28505996
Alignment:
| Q |
11 |
caaaggcatgttgcaagacagtgatgtcaaaacagtctgtccattaagttgattattgtagttgattaattccaacaagaagaagtcaaataacagaatc |
110 |
Q |
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| T |
28505775 |
caaaggcatattgcaagacagtgatgtcaaaacagtctgtccattaagttgattattgtagttgattaattccaacaagaagaagtcaaataacagaatc |
28505874 |
T |
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| Q |
111 |
atgtcggtcttattatgtctctttagtttgatttcatgcatgttatgtttcttgtagttttgtgaaatagaactatatgctgttggtatagtaggaataa |
210 |
Q |
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| T |
28505875 |
atgtcggtcttattatgtctctttagtttgatttcatgcatgttatgtttcttgtagttttgtgaaatagaactatatgatgttggtatagtaggaataa |
28505974 |
T |
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| Q |
211 |
cgccaaatactagcaacatttt |
232 |
Q |
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| T |
28505975 |
cgccaaatactagcaacatttt |
28505996 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 40736395 - 40736340
Alignment:
| Q |
72 |
ttgattaattccaacaagaagaagtcaaataacagaatcatgtcggtcttattatg |
127 |
Q |
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| T |
40736395 |
ttgattaattacaagaagaagaagccaaattacagaatcaagttggtcttattatg |
40736340 |
T |
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