View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_25 (Length: 228)
Name: NF17577_high_25
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_25 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 47 - 228
Target Start/End: Complemental strand, 22297047 - 22296866
Alignment:
| Q |
47 |
ctataatatacatacaccatcccatcaaccataattttcaccatgcaagctcacacattctcctacatatcctcaattcaaactaataatgacactgttg |
146 |
Q |
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| T |
22297047 |
ctataatatacatacaccatcccatcaaccataattttcaccatgcaagctcacacattctcctacatatcctcaattcaaactaataatgacactgttg |
22296948 |
T |
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| Q |
147 |
atgagtcttccatttcactctcacttggccctcctggtacacaccaaaaacctaaacttcttcatcaacatcatcatcatca |
228 |
Q |
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| T |
22296947 |
atgagtcttccatttcactctcacttggccctcctggtacacaccacaaacctaaacttcatcatcaacatcatcatcatca |
22296866 |
T |
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