View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_4 (Length: 495)
Name: NF17577_high_4
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 386
Target Start/End: Original strand, 34426075 - 34426443
Alignment:
| Q |
18 |
gaattgtcgcatgcttagggagagatattgactgctaatatgtgatgtgagtggtagcactagcagtggcaaatattacttgccttgaaaaaggggcatt |
117 |
Q |
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| T |
34426075 |
gaattgtcgcatgcttagggagagatattgactgctaatatgtgatgtgagtggtagcactagcagtggcaaatattacttacctgaaaaaaggggcatt |
34426174 |
T |
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| Q |
118 |
gcacatgataatgcaaatattaaaacccatcaatatcattatttgtataagaatgaaatttaggacacaattattatgtttatgtcttggtgccgtaccc |
217 |
Q |
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| T |
34426175 |
gcacatgataatgcaaatattaaaacccatcaatattattatttgtataagaatgaaatttaggacacaattattatgtttatgtcttggtgccgtaccc |
34426274 |
T |
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| Q |
218 |
ttaggacaactatttcacaattggccttttaacatgatccaaaaatacagtatgaaatatgtcacctgggtgctcattcagataatgtagtattgatatt |
317 |
Q |
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| T |
34426275 |
ttaggacaactatttcacaattgaccttttaacatgatccaaaaatacagtatgaaatatgtcacctgggtgctcattcagataatgtagtattgatatt |
34426374 |
T |
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| Q |
318 |
gctatctactgcattttaatccacattaagattatctcaaaagagttaacatgaagtaataataatatc |
386 |
Q |
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| T |
34426375 |
gctatctactgcattttaatccacattaagattatctcaaaagagttaacatgaagtaataataatatc |
34426443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 379 - 473
Target Start/End: Original strand, 34426481 - 34426575
Alignment:
| Q |
379 |
ataatatcaaaaagaagattttcagaatagtttcacatgaagtagagcatgagtcatgagatgataatttactagttataaaaggaagcatctac |
473 |
Q |
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| T |
34426481 |
ataatatcaaaaagaagattttcagaatagtttcacatgaagtagagcatgagtcatgagatgataatttactagttataaaaggaagcatctac |
34426575 |
T |
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