View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_high_5 (Length: 491)
Name: NF17577_high_5
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 438
Target Start/End: Complemental strand, 41967591 - 41967177
Alignment:
| Q |
20 |
ttgcatttgacttcagttgaatccttgttagtggatgataaggttggttctcatgttagttagttcctgaattatatatatactagttcaccgacccgtg |
119 |
Q |
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| T |
41967591 |
ttgcctttaacttcagctgaatccttgttagtggatgataaggttggttctcatgttagttagttcttgaattatatatatactagttcgctgacccgtg |
41967492 |
T |
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| Q |
120 |
ctatcgcccgagacatnnnnnnnnnnngaactatattagttgcaatgtaagaatagtttttgaaggtggata-tacagaagaaatgtagtgaaaatgatg |
218 |
Q |
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| T |
41967491 |
ctatcgcctgagaca-----aaaaaaagaactatattagttgcaatgtaagaatagtttttgaaggtggatagtgcagaagaaatgtagtgaaaatgatg |
41967397 |
T |
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| Q |
219 |
gagaaaatgttggnnnnnnncatagaaaactgaatttgatcttttaaatgtctacaatatggaatacgatctacgtacaatctttattgaacattctgaa |
318 |
Q |
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| T |
41967396 |
gagaaaatgttggaaaaaaacatagaaaactaaagttgaacttttaaatgtctacaatatggaatacgatctacgtacaatatttatcgaacattctgaa |
41967297 |
T |
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| Q |
319 |
aaacttctttgtagacgacattggatgtagtttcaatatcatcaccatcgtcgaaaaataatagtatctttaacccttttctaaaagtaactctgaacat |
418 |
Q |
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| T |
41967296 |
aaacttctttgtagacgacattggatgtagtttcaatgtcatcaccatcgtcgaaaagtaatagtatctttaacccttttctaaacgtaactctggacat |
41967197 |
T |
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| Q |
419 |
tgtgacatccagctgatcat |
438 |
Q |
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| T |
41967196 |
tgtgacatacaactgatcat |
41967177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 270 - 412
Target Start/End: Complemental strand, 27211237 - 27211095
Alignment:
| Q |
270 |
ctacaatatggaatacgatctacgtacaatctttattgaacattctgaaaaacttctttgtagacgacattggatgtagtttcaatatcatcaccatcgt |
369 |
Q |
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|||||||||| |||||| ||||| ||| | | || ||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||| || | |
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| T |
27211237 |
ctacaatatgaaatacgtactacggacattatctaccgaacattttgaaacacttctttgtagacgacattggatgtagtatgaatatcatcaccgtctt |
27211138 |
T |
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| Q |
370 |
cgaaaaataatagtatctttaacccttttctaaaagtaactct |
412 |
Q |
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| T |
27211137 |
cagaaagcaacaatatctttaacccttttctggaagtaactct |
27211095 |
T |
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