View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_low_11 (Length: 360)
Name: NF17577_low_11
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 60 - 343
Target Start/End: Complemental strand, 3022158 - 3021879
Alignment:
| Q |
60 |
aaaccatgaaatacaaatatatagctggatttgctaattacttgataagttagttagacctataagccaatatcatgatctcaattactcgatcttacaa |
159 |
Q |
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| T |
3022158 |
aaaccatgaaatataaatatatagctggatttgctaattacttgataagttaattagacctacaagccaatatcatgatcccaattacttgatcttacaa |
3022059 |
T |
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| Q |
160 |
cagaatttgatccctttgtactttccgcaggaaaagtttgtctacgcatctccaatccagtagaactttttgcaactttgtcgaataagggtaagagaac |
259 |
Q |
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| T |
3022058 |
tagaatttgatcactttgtacattccacaggaaaagtttgtctaagcatc-----tccagtagaactatttgcaactttgttgaagaagggtaagagaac |
3021964 |
T |
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| Q |
260 |
atgtagctgctctgatcagagaaacat-aacaagttcaaagttatatgcatcaataatttaaataatcatattgtgaagcattat |
343 |
Q |
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| T |
3021963 |
atgtagctattctgataagagaaatataaacaagttcaaatttctatgtatcaataatttaaataatgaatttgtgaaacattat |
3021879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 219 - 346
Target Start/End: Original strand, 38750409 - 38750536
Alignment:
| Q |
219 |
gtagaactttttgcaactttgtcgaataagggtaagagaacatgtagctgctctgatcagagaaacataacaagttcaaagttatatgcatcaataattt |
318 |
Q |
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| T |
38750409 |
gtagaactatttgcaactttgtcgaataagggtaagagaacatgtagctgctctgatcagagaaacataacaagttcaaagttctatgcatcaataattt |
38750508 |
T |
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| Q |
319 |
aaataatcatattgtgaagcattatttg |
346 |
Q |
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| T |
38750509 |
aaataatcaatttgtgaagcattatttg |
38750536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 37132990 - 37133075
Alignment:
| Q |
60 |
aaaccatgaaatacaaatatatagctggatttgctaattacttgataagttagttagacctataagccaatatcatgatctcaatt |
145 |
Q |
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||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
37132990 |
aaaccatgaaatacaaatatacagctccatttgttaattacttgataagttagttaggtcttcggaccaatatcatgatctcaatt |
37133075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 168 - 215
Target Start/End: Complemental strand, 35142107 - 35142060
Alignment:
| Q |
168 |
gatccctttgtactttccgcaggaaaagtttgtctacgcatctccaat |
215 |
Q |
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| T |
35142107 |
gatcactttgtactttccacaggaaaagtttgtctaaacatctccaat |
35142060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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