View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_low_12 (Length: 348)
Name: NF17577_low_12
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 43131897 - 43132218
Alignment:
| Q |
11 |
cacagaaggtgggagagaaacattgttaagtcgctcgagaaccagaataagagcctgagtacccaaattaccttcaccatgagccttaagagacacataa |
110 |
Q |
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| T |
43131897 |
cacagaaggtgggagagaaacattgttaagtcgctcgagaaccagaataagagcctgagtacccaaattaccttcaccatgagccttaagagacacataa |
43131996 |
T |
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| Q |
111 |
agctgttgagcaagtgccaaaccaggcaaagcaatacccattttctcacattctttcaaacaaatccctaaatccttaacaaaatgattcacataaaacc |
210 |
Q |
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| T |
43131997 |
agctgttgagcaagtgccaaaccaggcaaagcaatacccattttctcacattctttcaaacaaatccctaaatccttaacaaaatgattcacataaaacc |
43132096 |
T |
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| Q |
211 |
ctgcttcaaaatccctcttcaaaattctcttaccatacaactcaagtgatttcgaacctgctgcacccgtcgaaattgcatccagatacaaccctacatc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43132097 |
ctgcttcaaaatccctcttcaaaattctcttaccatacaactcaagtgatttcgaacctgctgcacccgtcgaaattgcatccagatacaaccctacatc |
43132196 |
T |
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| Q |
311 |
aagtcccgctttgtgtgcatac |
332 |
Q |
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| T |
43132197 |
aagtcccgctttgtgtgcatac |
43132218 |
T |
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