View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17577_low_17 (Length: 317)
Name: NF17577_low_17
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 2 - 296
Target Start/End: Complemental strand, 36274721 - 36274427
Alignment:
| Q |
2 |
atgtcctcaagaactgtcaacatttatctgttattataaatcttaccttacaccttccttgaactaatactccagttcttcctccacttcatttggctcg |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36274721 |
atgtcctcaagaactgtcaacatttatctgttattataaatcttaccttacaccttccttgaactaatactccagttcttcctccacttcatttggctcg |
36274622 |
T |
|
| Q |
102 |
tcaatgttattgtgtgcgcgcgaagactctccgacttcctgctgagattttctaaatatttctattattcgcaagacttagatatcttaagtgtttcagc |
201 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36274621 |
tcaatgttattgtgtgtgcgcgaagactctccgacttcctgctgagattttctaaatatttctattattcgcaagacttagatatcttaagtgtttcagc |
36274522 |
T |
|
| Q |
202 |
ttgccaatggactgaggcaaggtctcatatgtagaatcacttaaatccaaaaacctcaggtgtgtgcactttgatatgcatgcattcaagaaaac |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36274521 |
ttgccaatggactgaggcaaggtctcatatgtagaatcacttaaatccaaaaacctcaagtgtgtgcactttgatatgcatgcattcaagaaaac |
36274427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 164 - 294
Target Start/End: Complemental strand, 40222098 - 40221968
Alignment:
| Q |
164 |
tattattcgcaagacttagatatcttaagtgtttcagcttgccaatggactgaggcaaggtctcatatgtagaatcacttaaatccaaaaacctcaggtg |
263 |
Q |
| |
|
|||||||| | ||||| ||||||||||| ||||| || | |||||||||| ||||||| ||||||| |||||||| |||||||||||||| | || ||| |
|
|
| T |
40222098 |
tattattctccagactaagatatcttaaatgttttaggtggccaatggaccaaggcaagctctcatacgtagaatcgcttaaatccaaaaatcgcaagtg |
40221999 |
T |
|
| Q |
264 |
tgtgcactttgatatgcatgcattcaagaaa |
294 |
Q |
| |
|
| | ||| || ||||||||| |||||||||| |
|
|
| T |
40221998 |
tttacaccttaatatgcatgaattcaagaaa |
40221968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University