View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17577_low_23 (Length: 239)
Name: NF17577_low_23
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_low_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 2 - 220
Target Start/End: Original strand, 34818614 - 34818832
Alignment:
| Q |
2 |
gagacatatgtccaattttagcatctgaattacaattatgcttcaaaattcaaataggattacaattccggtggaaaggactatgtgaccnnnnnnntaa |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
34818614 |
gagacagatgtccaattttagcatctgaattacaattatgcttcaaaattcaaataggatcacaattccggtggaaaggactatatgaccaaaaaaataa |
34818713 |
T |
|
| Q |
102 |
atgtactcattgattacattgccttgaattatatatatttaatgtaaagtcaacatatcacttaagtttgacatgtctagaactataactgcatagtaat |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34818714 |
atgtactcattgattacattgccttgaattatatatatttaatgtaaagtcaacatatcacttaagtttgacatgtccagaactataactgcatagtaat |
34818813 |
T |
|
| Q |
202 |
gtcaccaatggttgcatga |
220 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
34818814 |
gtcaccaatggttgcatga |
34818832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University