View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17577_low_3 (Length: 541)
Name: NF17577_low_3
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 15 - 524
Target Start/End: Complemental strand, 41658268 - 41657759
Alignment:
| Q |
15 |
aatatagagattattgtgaatttgttcttctttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658268 |
aatatagagattattgtgaatttgttcttctttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtg |
41658169 |
T |
|
| Q |
115 |
ccaccaattgtgacgaagtttggaataacattgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattatgttgggaaggcatt |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41658168 |
ccaccaattgtgacgaagtttggaataacattgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattatgttgggaaggcatt |
41658069 |
T |
|
| Q |
215 |
cagacctcaggttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaaaaatttttcctcaaacaatgatgagttgcaagt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
41658068 |
cagacctcaggttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaacattttttcctcaaacaatgatgagttgcaagt |
41657969 |
T |
|
| Q |
315 |
ttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttga |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657968 |
ttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttga |
41657869 |
T |
|
| Q |
415 |
ggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggta |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41657868 |
ggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggta |
41657769 |
T |
|
| Q |
515 |
tgttaggtcc |
524 |
Q |
| |
|
|||||||||| |
|
|
| T |
41657768 |
tgttaggtcc |
41657759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 15 - 524
Target Start/End: Original strand, 43211159 - 43211669
Alignment:
| Q |
15 |
aatatagagattattgtgaatttgttcttctttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtg |
114 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43211159 |
aatatagatatcattgtgaatttggtcttctttgtaacagacctgctcaatacggtgtcttagttgcgtgaggctttctctcaaaaatgctcggaaggtg |
43211258 |
T |
|
| Q |
115 |
ccaccaattgtgacgaagtttggaataacattgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattatgttgggaaggcatt |
214 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
43211259 |
ccaccaattgtgacggagtctggaataacattgactgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattaggttaggaagacatt |
43211358 |
T |
|
| Q |
215 |
cagacctcaggttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactatggtttccaaaaatttt-tcctcaaacaatgatgagttgcaag |
313 |
Q |
| |
|
|||| || | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||| |||||||||||||||||||||||| |
|
|
| T |
43211359 |
cagatcttatgttttcgtcatattcaaaaatcgttgtaaataaacaatgttgcactacggtttccaacatttttttcctcaaacaatgatgagttgcaaa |
43211458 |
T |
|
| Q |
314 |
tttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttg |
413 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211459 |
tttttacctgggtttcaaggggatcagcctcgcgtgaaacaatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttg |
43211558 |
T |
|
| Q |
414 |
aggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggt |
513 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43211559 |
aggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggt |
43211658 |
T |
|
| Q |
514 |
atgttaggtcc |
524 |
Q |
| |
|
||||||||||| |
|
|
| T |
43211659 |
atgttaggtcc |
43211669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 46 - 519
Target Start/End: Complemental strand, 41652229 - 41651752
Alignment:
| Q |
46 |
ttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtgacgaagtttggaataacat |
145 |
Q |
| |
|
|||| |||||||||||||||||| ||||| || ||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
41652229 |
ttgtgacagacctgctcaatacggtgtctcagatgcgtgaagctttctcttggaaaagctcggaaggtgccaccaattgtgacagagtctggaataacat |
41652130 |
T |
|
| Q |
146 |
tgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatatta--tgttgggaaggcattcagacctcaggttttcgtcatattcaaaa |
243 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||||||||| |||| |||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
41652129 |
tgaatgcaccacctccttgaaactttcctactgtcacaacctgcgaggatattatttgttaggaaggcatttaggcctcaggttttcgtcatattaaaaa |
41652030 |
T |
|
| Q |
244 |
atcgttgtaaataaacaatgttgcact--atg---gtttccaaaaatttttcctcaaacaatgatgagttgcaagtttttacctgggtgtcaaggggatc |
338 |
Q |
| |
|
||| ||||||| ||| ||||| || | ||| | || || ||| | |||||||| |||||||| || ||||||||||| ||| | |||||| |
|
|
| T |
41652029 |
atcattgtaaacaaataatgtggcggtaaatgacagaatcaaacaatggt---gcaaacaatcatgagttgtaaacttttacctgggagtctacgggatc |
41651933 |
T |
|
| Q |
339 |
agcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgaggattggctgcatggcctcccttg |
438 |
Q |
| |
|
| ||||||||||||| || |||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||| ||||| |||| || ||| || |
|
|
| T |
41651932 |
aacctcgcgagaaacaatttgttgtaagctaacaactacattggaagccgccaaaatggggtcgatagcatggtgaggaatggctccatgaccccccatg |
41651833 |
T |
|
| Q |
439 |
cctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtatgtta |
519 |
Q |
| |
|
|| ||||||||||||| |||||| || | ||||||| |||||||| |||||||| ||||||||||||||||||| |||| |
|
|
| T |
41651832 |
ccgcttattactgcttcaaagaaaccgcttcctgcagcaataggaccagacctagaagccacttcacctaaaggtaagtta |
41651752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 48 - 264
Target Start/End: Original strand, 43225826 - 43226046
Alignment:
| Q |
48 |
gtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtgacgaagtttggaataacattg |
147 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
43225826 |
gtaacagacctgctcaatacggtgtctcagatgcgtgaagctttctctcgaaaaagctcggaaggtgccaccaattgtgacggagtctggaataacattg |
43225925 |
T |
|
| Q |
148 |
aatgcaccacctccttgaatatttcctacagtcacaacctgtgaggata----ttatgttgggaaggcattcagacctcaggttttcgtcatattcaaaa |
243 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||| | |||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
43225926 |
aatgcaccacctccttgaaactttcctacagtcacaacctatgagtatattatttatgttagaaaggcatttagacctcaggttttcatcatattcaaaa |
43226025 |
T |
|
| Q |
244 |
atcgttgtaaataaacaatgt |
264 |
Q |
| |
|
||| ||||||| ||| ||||| |
|
|
| T |
43226026 |
atcattgtaaacaaataatgt |
43226046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 293 - 519
Target Start/End: Original strand, 43226123 - 43226349
Alignment:
| Q |
293 |
caaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaa |
392 |
Q |
| |
|
|||||||| |||||||| ||| ||||||||||| ||| | ||||||| |||||||||||||||| |||||||||||||||| ||||| ||||| ||||| |
|
|
| T |
43226123 |
caaacaatcatgagttgtaagcttttacctgggagtctacgggatcaacctcgcgagaaacgatttgttgtaagctaacaactacattggaagcagccaa |
43226222 |
T |
|
| Q |
393 |
aatggggtcaatagcatgttgaggattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgaccta |
492 |
Q |
| |
|
||||||||| |||||||| |||||| ||||| |||| || ||| |||| ||||||||||||| |||||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
43226223 |
aatggggtcgatagcatggtgaggaatggctccatgaccccccatgccgcttattactgcttcaaagaaaccacatcctgcagccataggaccagacctc |
43226322 |
T |
|
| Q |
493 |
gatgccacttcacctaaaggtatgtta |
519 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
43226323 |
gatgccacttcacctaaaggtaagtta |
43226349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 316 - 519
Target Start/End: Original strand, 43204438 - 43204641
Alignment:
| Q |
316 |
tttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgag |
415 |
Q |
| |
|
|||||||| | ||| ||||||||| |||||||||||| || ||||||||||||||||||||||| |||| ||||| || ||||| |||| |||||||| |
|
|
| T |
43204438 |
tttacctgagagtcgaggggatcaatctcgcgagaaacaatttgttgtaagctaacaatcacattggaagttgccaatatagggtctatagaatgttgag |
43204537 |
T |
|
| Q |
416 |
gattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacctaaaggtat |
515 |
Q |
| |
|
|| ||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
43204538 |
gaatggctgcatggcctcccctgccgcttattactgctttaaagaagccatttcctgcaaatataggaccggacctagaagccacttcacctagaggtaa |
43204637 |
T |
|
| Q |
516 |
gtta |
519 |
Q |
| |
|
|||| |
|
|
| T |
43204638 |
gtta |
43204641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 43203888 - 43204049
Alignment:
| Q |
39 |
ttcttctttgtaacagacctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtgacgaagtttgga |
138 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| ||||| ||||||||||| | |||| |||||||| ||||||||||||||||| ||| |||| |
|
|
| T |
43203888 |
ttcttcttcataacagacctgctcaatgcggtgtctcagttgtgtgaagctttcgtttgaaaaagctcggaaagtgccaccaattgtgacagagtctgga |
43203987 |
T |
|
| Q |
139 |
ataacattgaatgcaccacctccttgaatatttcctacagtcacaacctgtgaggatattat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||| ||||| |||||||||||| |
|
|
| T |
43203988 |
ataacattgaatgcaccacctccttgaatcattgctacagtcaaaacctatgaggatattat |
43204049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 9e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 293 - 512
Target Start/End: Original strand, 25928362 - 25928589
Alignment:
| Q |
293 |
caaacaatgatgagttgcaagtttttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaa |
392 |
Q |
| |
|
|||||| | |||||||| ||| |||||| |||| ||| | ||||||| ||||||||||||| || ||||||||||||| | | ||||| ||||||||||| |
|
|
| T |
25928362 |
caaacattcatgagttgtaagcttttacttgggagtctatgggatcaacctcgcgagaaactatttgttgtaagctaatagttacattggaagccgccaa |
25928461 |
T |
|
| Q |
393 |
aatggggtcaatagcatgttgaggattggctgcatggcctcc--------cttgcctcttattactgctttaaagaagccacctcctgcaagcataggac |
484 |
Q |
| |
|
|||||||| | | |||| |||||| ||||| |||| || || | |||| ||||||||||||| |||||| |||| ||||||||| ||||||| |
|
|
| T |
25928462 |
aatggggttgagaacatggtgaggaatggctccatgccccccccccaccacatgccgcttattactgcttcaaagaaaccacttcctgcaagaataggac |
25928561 |
T |
|
| Q |
485 |
ctgacctagatgccacttcacctaaagg |
512 |
Q |
| |
|
| |||||| |||| | ||||||||||| |
|
|
| T |
25928562 |
cagacctaaatgcaatgtcacctaaagg |
25928589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 55 - 188
Target Start/End: Original strand, 5070461 - 5070594
Alignment:
| Q |
55 |
acctgctcaatacgttgtcttagttgcgtgaagctttctctcaaaaatgctcggaaggtgccaccaattgtgacgaagtttggaataacattgaatgcac |
154 |
Q |
| |
|
|||| |||||| || ||||| ||||| ||||||||||| | |||| ||||||||||| |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
5070461 |
acctcctcaatccgctgtctcagttggttgaagctttctttagaaaaggctcggaaggtaccaccaattgtgacatgatctggaataacattgaatgcac |
5070560 |
T |
|
| Q |
155 |
cacctccttgaatatttcctacagtcacaacctg |
188 |
Q |
| |
|
||||||||| || ||| | | ||||||||||| |
|
|
| T |
5070561 |
tacctccttggatctttgcaatcgtcacaacctg |
5070594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 506
Target Start/End: Original strand, 5071208 - 5071398
Alignment:
| Q |
316 |
tttacctgggtgtcaaggggatcagcctcgcgagaaacgatatgttgtaagctaacaatcacattcgaagccgccaaaatggggtcaatagcatgttgag |
415 |
Q |
| |
|
|||||||||| ||| | |||||||||||||||||||| | || |||| ||||| |||| || ||||| || || ||||| || |||| ||||||| |
|
|
| T |
5071208 |
tttacctgggagtctaaaggatcagcctcgcgagaaacaaggtgctgtaggctaataatcgcaccagaagctgctaatatgggatctatagattgttgag |
5071307 |
T |
|
| Q |
416 |
gattggctgcatggcctcccttgcctcttattactgctttaaagaagccacctcctgcaagcataggacctgacctagatgccacttcacc |
506 |
Q |
| |
|
|| | |||||||| |||||||| || |||||| ||||| |||||| |||| |||||| | || ||||| ||||| || | ||||||||| |
|
|
| T |
5071308 |
gaatagctgcatgacctccctttccacttatttttgcttcaaagaatccacttcctgccaatattggaccagacctggaggacacttcacc |
5071398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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