View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17577_low_6 (Length: 476)

Name: NF17577_low_6
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17577_low_6
NF17577_low_6
[»] chr7 (11 HSPs)
chr7 (16-463)||(4631379-4631826)
chr7 (69-460)||(4667396-4667775)
chr7 (329-391)||(4637378-4637440)
chr7 (329-391)||(4711584-4711646)
chr7 (329-391)||(4864446-4864508)
chr7 (327-404)||(4654004-4654081)
chr7 (329-393)||(4696702-4696766)
chr7 (330-393)||(4644214-4644277)
chr7 (335-404)||(4783353-4783422)
chr7 (335-404)||(4815782-4815851)
chr7 (327-391)||(4673224-4673288)
[»] chr4 (1 HSPs)
chr4 (19-463)||(18924953-18925385)


Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 16 - 463
Target Start/End: Complemental strand, 4631826 - 4631379
Alignment:
Q  16 ataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattccctt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631826 ataacaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattccctt 4631727  T
Q  116 cgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttacccaacatcgtat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4631726 cgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttatccaacatcgtat 4631627  T
Q  216 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631626 tcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaa 4631527  T
Q  316 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631526 acgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaatt 4631427  T
Q  416 aaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4631426 aaatggtttagctttcatcaacggaattgagattgtgtctatgccttc 4631379  T

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Target: chr7; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 69 - 460
Target Start/End: Complemental strand, 4667775 - 4667396
Alignment:
Q  69 aaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgcctctgcacgtatttctttttcgaatttcacattctccttttcttccatca 168  Q
    ||||||||||||||||||||||||||| ||||||| |  ||||| ||  ||||||||||||| || |||||  ||||||||||||| |||||| | ||||    
T  4667775 aaagccaaagctaatcctaactctgattctgttaatcatattccattttcctctgcacgtatatcattttccgatttcacattctcattttctccgatca 4667676  T
Q  169 ccaatggccctatttttcttcgcctctatttttacccaacatcgtattcgtatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaac 268  Q
      | ||||||| |||||||||||||| ||||||||||||||||||||      ||| || |||||||||||||||| |||||||||||||||||||||||    
T  4667675 atagtggccctgtttttcttcgcctccatttttacccaacatcgtat------caaaactttgaaacctccaacgctctcttcacagtcaaagtaggaac 4667582  T
Q  269 caaccttacccttctcaaagactttaatccctcgctttggctttcaaacgatagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgag 368  Q
    ||||||||||||||||||||||||||  || || ||||||||| ||||||||| ||||||||||||||||||||||||||| || |     | |   |||    
T  4667581 caaccttacccttctcaaagactttagcccttcactttggcttccaaacgataacaagacaatcaccaaagaatattgcatccataccaaacaaggggag 4667482  T
Q  369 aagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaatggtttagctttcatcaacggaattgagattgtgtctatgcc 460  Q
    || ||| || ||||||||||||||||      |||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  4667481 aaactagacgtaactttcattcccaa------aaacacaaaccaattaaatgcttttgctttcatcaacggaattgagattgtgtctatgcc 4667396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 4637440 - 4637378
Alignment:
Q  329 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 391  Q
    |||||||||||||||||||||||||||    |||||||| ||| |||||||||||||||||||    
T  4637440 aatcaccaaagaatattgcatacaaatcaaaccaaatgaaaagttaaacataactttcattcc 4637378  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 4711584 - 4711646
Alignment:
Q  329 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 391  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
T  4711584 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 4711646  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 329 - 391
Target Start/End: Complemental strand, 4864508 - 4864446
Alignment:
Q  329 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 391  Q
    ||||||||||||||||||||| |||||     |||||||||||||||||||||||||||||||    
T  4864508 aatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataactttcattcc 4864446  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 327 - 404
Target Start/End: Complemental strand, 4654081 - 4654004
Alignment:
Q  327 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 404  Q
    ||||||||||||||||||||||| ||| |    || ||| |||||||||||||||||||||||||||| || ||||||    
T  4654081 acaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacataactttcattcccaacaacacaaac 4654004  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 4696702 - 4696766
Alignment:
Q  329 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 393  Q
    ||||||||||||||||||||| ||||     |||||||||||| |||||||||||||||||||||    
T  4696702 aatcaccaaagaatattgcattcaaaccaaaccaaatgagaagttaaacataactttcattccca 4696766  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 393
Target Start/End: Complemental strand, 4644277 - 4644214
Alignment:
Q  330 atcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattccca 393  Q
    |||| |||||| |||||||| ||||||    |||||||||||||||||||||||||||||||||    
T  4644277 atcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacataactttcattccca 4644214  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 4783353 - 4783422
Alignment:
Q  335 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 404  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4783353 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4783422  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 335 - 404
Target Start/End: Original strand, 4815782 - 4815851
Alignment:
Q  335 caaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaac 404  Q
    ||||||||||| ||| |||||    ||||| ||||||||||||||||||||||||||||| || ||||||    
T  4815782 caaagaatattccatccaaatcaaaccaaacgagaagctaaacataactttcattcccaacaacacaaac 4815851  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 327 - 391
Target Start/End: Complemental strand, 4673288 - 4673224
Alignment:
Q  327 acaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 391  Q
    |||||||||||||||| ||| || |||||    || ||||||||||||||||||| |||||||||    
T  4673288 acaatcaccaaagaattttgtatccaaatcaagcccaatgagaagctaaacataaatttcattcc 4673224  T

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Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 18924953 - 18925385
Alignment:
Q  19 acaccaaattattctctatcattgaaccacaaaccgaactcccgtctttcaaagccaaagctaatcctaactctgatgctgttaagcgaattcccttcgc 118  Q
    |||||||| |||||||||||||||||||||| || ||| |  | ||| ||||| ||||| | || |||||||||||| ||||||| | |||||| || ||    
T  18924953 acaccaaactattctctatcattgaaccacagactgaattttcatctatcaaatccaaacccaaccctaactctgattctgttaaccaaattccgtttgc 18925052  T
Q  119 ctctgcacgtatttctttttcgaatttcacattctccttttcttccatcaccaatggccctatttttcttcgcctctatttttacccaacatcgtattcg 218  Q
    ||| ||||||||||| ||||| || ||||||||||| ||| ||||| || | ||| |||||||||||||||||||  ||||||||||||||||||||       
T  18925053 ctcagcacgtatttcattttccaacttcacattctcatttccttccgtcgctaatagccctatttttcttcgccttcatttttacccaacatcgtat--- 18925149  T
Q  219 tatcaacacattgaaacctccaacgccctcttcacagtcaaagtaggaaccaaccttacccttctcaaagactttaatccctcgctttggctttcaaacg 318  Q
       ||| || ||||||||| | ||||||||||||| |||||||| ||||||||  | ||||||||||| |||||||| ||| | |||||||||  |||||    
T  18925150 ---caaaactttgaaaccttcgacgccctcttcaccgtcaaagttggaaccaatgtcacccttctcaatgactttaaccccgcactttggcttcaaaacg 18925246  T
Q  319 atagcaagacaatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcccaaaaatacaaacacaaaccaattaaa 418  Q
    ||| |||||||||||| ||||| || ||| |  ||||    |||| ||||||| |||| ||||||||||||||   ||| ||   || ||| |||  |||    
T  18925247 ataacaagacaatcacgaaagagtactgcctcaaaatgaaaccaactgagaagttaaatataactttcattcc---aaacac---cataaatcaaccaaa 18925340  T
Q  419 tggtttagctttcatcaacggaattgagattgtgtctatgccttc 463  Q
     | ||  ||||||||||||||||||||||| ||||| ||||||||    
T  18925341 ggcttatgctttcatcaacggaattgagatcgtgtccatgccttc 18925385  T

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