View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_low_8 (Length: 423)
Name: NF17577_low_8
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 46731966 - 46731564
Alignment:
| Q |
1 |
ggcacggcagagggtcagatttgttttggagtgcacaaagataacaacctctgccagtagaagtgatatatgacaatcaaagacataaggcaaaatatcc |
100 |
Q |
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| T |
46731966 |
ggcacggcagagggtcagatttgttttggagtgcacaaagataacaacctctgccagtagaagtgatatatgacaatcaaagacataaggcaaaatatcc |
46731867 |
T |
|
| Q |
101 |
gtaccttttttggttctattatcattcagtatgcacattgcacagataatatagacaaaatattacaactattgatgatgttatgcctatgcttataata |
200 |
Q |
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| T |
46731866 |
gtaccttttttggttctattatcattcagtatgcaca-------gataatatagacaaaatattacaactattgatgatgttatgcctatgcttataata |
46731774 |
T |
|
| Q |
201 |
attaacaaaagtgaaatactattaatcatatcatatcaatataaatattgaatatactactatttctctacccaccttagccctcgtgatttgaggggca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46731773 |
attaacaaaagtgaaatactattaatcatatcatatgaatataaatattgaatatactactatttctctacccaccttagccctcgtgatttgaggggca |
46731674 |
T |
|
| Q |
301 |
ttgtttgcactttttcagttaaaaacagttatcgatggtgaccaagtttactttttctccaccatccccaagattttaatgttcacaacgatacagtaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46731673 |
ttgtttgcactttttcagttaaaaacagttatcgatggtgaccaagtttactttttctccaccatccccaagattttaatgttcacaacgatacagtaat |
46731574 |
T |
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| Q |
401 |
ttaattaatg |
410 |
Q |
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|||||||||| |
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| T |
46731573 |
ttaattaatg |
46731564 |
T |
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