View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17577_low_9 (Length: 410)
Name: NF17577_low_9
Description: NF17577
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17577_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 39114583 - 39114869
Alignment:
| Q |
1 |
cacagacctaagtgcacatgagaattctcacaatgcacataaacacagtnnnnnnnnnnnnntatttgtacatattcatgttacgacttaaatcaaattt |
100 |
Q |
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| T |
39114583 |
cacacacctaagtgcacatgagaattctcacaatgcacataaacacagtaaaaaatgaaaaatatttgtacatattcatgttacgacttaaatcaaaatt |
39114682 |
T |
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| Q |
101 |
tacactcgcttaaataaagtacctgaaactatatgacttaaacatgatatagctaatgcatcatgttaannnnnnnnccttccaaaataaagacaattgt |
200 |
Q |
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| T |
39114683 |
tacactcgcttaaataaagtacctgaaactatatgacttaaacatg--atagctaatgcatcatgttaattttttttccttccaaaataaagacaattgt |
39114780 |
T |
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| Q |
201 |
caagcacgtggtcaaaattataaacaattctacaagcgtattagagagcatatttgtagaaaatatttcaagttgaaataattcagagatttcactcaca |
300 |
Q |
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| T |
39114781 |
caagcacgtggtcaaaattataaacaattctaccagcg------------tatttgtagaaaatatttcaagttgaaataattcagagatttcactcaca |
39114868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 298 - 395
Target Start/End: Original strand, 39114891 - 39114988
Alignment:
| Q |
298 |
acaataactcttgactattgtaaaaaacaaacataatatgcatgcaatttattctaataacacccttatttagtgaaatcaaataagttagttgaata |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39114891 |
acaataactcttgactattgtaaaaaacaaacataatatgcatgcaatttattctaataacacccttatttagtgaaatcaaataagttagttgaata |
39114988 |
T |
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