View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17578_high_11 (Length: 299)
Name: NF17578_high_11
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 43961842 - 43962116
Alignment:
| Q |
9 |
agaagaagacgtgaatcgcgggaaggagcaagttgatgtcgctgaacaaacgacagaggaagatttggctccaaataggttgttttcgccggttcaagag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43961842 |
agaagaagacgtgaatcgcgggaaggagcaagttgatgtcgctgaacaaacggcggaggaagatttggctccaaataggttgttttcgccggttcaagag |
43961941 |
T |
|
| Q |
109 |
caacaacgggtggaattgaagattagtaagagtgccaaacttccaatcttttcagtttgatggatgattcagctgtttgatggtgtttttgtgtaattgt |
208 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43961942 |
caacaacgcgtggaattgaagattagtaagagtgccacacttccaatcttttcagtttgatggatgattcagctgtttgatggtgtttttgcgtaattgt |
43962041 |
T |
|
| Q |
209 |
tgttctttccttcttcctcccttcaaattggttttgcttccgcttgattctgctcgttttggatccggtttgttt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||| |
|
|
| T |
43962042 |
tgttctttccttcttcctcccttcaaattggttttgcttcctcttgattttgctcgttttggatccagtttgttt |
43962116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 18787991 - 18787937
Alignment:
| Q |
148 |
cttccaatcttttcagtttgatggatgattcagctgtttgatggtgtttttgtgt |
202 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| |||||| ||||| |
|
|
| T |
18787991 |
cttccgatctgttcagtttgatggatgatttggctgtttgattgtgtttatgtgt |
18787937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 154 - 283
Target Start/End: Original strand, 38234277 - 38234406
Alignment:
| Q |
154 |
atcttttcagtttgatggatgattcagctgtttgatggtgtttttgtgtaattgttgttctttccttcttcctcccttcaaattggttttgcttccgctt |
253 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38234277 |
atctgttcggtttgatggatgattcagctgtttgatggtgtttttgcgtaattgttgttctttccttcttcctcccttcaaattggttttgcttcctctt |
38234376 |
T |
|
| Q |
254 |
gattctgctcgttttggatccggtttgttt |
283 |
Q |
| |
|
|||| |||||||||||||||| |||||||| |
|
|
| T |
38234377 |
gattttgctcgttttggatccagtttgttt |
38234406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 39289025 - 39289093
Alignment:
| Q |
77 |
ctccaaataggttgttttcgccggttcaagagcaacaacgggtggaattgaagattagtaagagtgcca |
145 |
Q |
| |
|
|||| ||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39289025 |
ctccgaatagattgttttctccggtgcaagagcaacaacgggtggaattgaagattagtaagagtgcca |
39289093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 6803071 - 6803190
Alignment:
| Q |
164 |
tttgatggatgattcagctgtttgatggtgtttttgtgtaattgttgttctttccttcttcctcccttcaaattggttttgcttccgcttgattctgctc |
263 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
6803071 |
tttgatggatgattcagttgtttgatggtgtttttgcgtgattgttgttctttccttcttcctcccttcaaatcggttttgcttcctcttgattctgctc |
6803170 |
T |
|
| Q |
264 |
gttttggatccggtttgttt |
283 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6803171 |
gttttggatccggtttgttt |
6803190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 148 - 283
Target Start/End: Original strand, 12373161 - 12373295
Alignment:
| Q |
148 |
cttccaatcttttcagtttgatggatgattcagctgtttgatggtgtttttgtgtaattgttgttctttccttcttcctcccttcaaattggttttgctt |
247 |
Q |
| |
|
||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||| || |
|
|
| T |
12373161 |
cttccgatctgttcggtttgatggatgattcagctgtttgatggtgtttttgtgtgattgttgttctttccttcttcttcccttcaaatcagttttg-tt |
12373259 |
T |
|
| Q |
248 |
ccgcttgattctgctcgttttggatccggtttgttt |
283 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||| |
|
|
| T |
12373260 |
cctcttgattccgctcgttttggatccggtttgttt |
12373295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University