View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17578_high_12 (Length: 297)
Name: NF17578_high_12
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_12 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 281
Target Start/End: Original strand, 14598482 - 14598749
Alignment:
| Q |
14 |
catcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcagg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598482 |
catcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcagg |
14598581 |
T |
|
| Q |
114 |
atcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataaaggacggcaagg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598582 |
atcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataaaggacggcaagg |
14598681 |
T |
|
| Q |
214 |
tcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatat |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14598682 |
tcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatat |
14598749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 14609994 - 14609727
Alignment:
| Q |
14 |
catcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcagg |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
14609994 |
catcatctgaaacataacaagcgagcttctccactggataatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctctttatcagg |
14609895 |
T |
|
| Q |
114 |
atcagcagttgacacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctggggatggagcatcaaatttctcataaaggacggcaagg |
213 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||| | | | | |||||||||| ||||||| | ||| |
|
|
| T |
14609894 |
atcagccgtcgacacaaagaggtcacaaccaggcagatcagatcttgctgtgggatttgtcggggttacaacgtggaatttctcatgaaggacgtctagg |
14609795 |
T |
|
| Q |
214 |
tcagtgctacggttaaccggtgaaatctttggaatttggtcaagtatccatgaaaagccgaaccatat |
281 |
Q |
| |
|
||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14609794 |
tcagtgctacgattaactggagaaagctttggaatttggtcaagtatccatgaaaagccgaaccatat |
14609727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 12194801 - 12194952
Alignment:
| Q |
25 |
acataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcaggatcagcagttg |
124 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||||||||| || |||||||||||||| || || ||||| || ||||| ||||| ||||| ||||||| |
|
|
| T |
12194801 |
acataacatgcgagtttatcaacagggtaatcaactgctagaattgaaagaatggtatttgcggtaacaaggggtggctctttttctggatcggcagttg |
12194900 |
T |
|
| Q |
125 |
acacaaagaggtcacaaccaggcagatcagatctccctgtgggattttctgg |
176 |
Q |
| |
|
||||||| | ||| || || ||||||||| ||||||| |||||| |||| |
|
|
| T |
12194901 |
acacaaacatatcaattcccgggagatcagatttccctgttggatttgctgg |
12194952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 44633032 - 44632884
Alignment:
| Q |
14 |
catcatctgaaacataacaagcgagtttctccacagggtaatcaactgctaatatggaaagaatggtattggcagttacaagaggcggctccttttcagg |
113 |
Q |
| |
|
||||||| || | ||||||||| | ||| |||||||| ||||||||||| | || || | |||||| || |||||||||||||| ||||| ||||| || |
|
|
| T |
44633032 |
catcatcagacaaataacaagcaactttttccacaggataatcaactgcaaggatagataaaatggtgtttgcagttacaagaggtggctctttttctgg |
44632933 |
T |
|
| Q |
114 |
atcagcagttgacacaaagaggtcacaaccaggcagatcagatctccct |
162 |
Q |
| |
|
||| |||||||| ||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
44632932 |
atctgcagttgaaacaaagacatcaattccagggagatcagacctccct |
44632884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University