View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17578_high_13 (Length: 276)
Name: NF17578_high_13
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 17517570 - 17517323
Alignment:
| Q |
13 |
aatatcaagaatcgcgacacgagcaatgtcgtgacagaaatataaaacattgaaaaaggagcccaaatttcacttacaaattatgctcaaacaatgaagt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
17517570 |
aatatcaagaatcgcgacacgagcaatgtcgtgacagaaatataaaacgttgaaaaaggagcccaaatttcacttacaaatgatgctcaaacaataaagt |
17517471 |
T |
|
| Q |
113 |
aatgaataaagtactgtta-gaacacatgaatgatgaatgtgattataataagtagaacatagtgcaaaatataaaggaaccacaatgttctcaccttat |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17517470 |
gatgaataaagtactgttaagaacacatgaatgatgaatgtgattataataagtaaaacataatgcaaaatataaaggaaccacaatgttctcaccttat |
17517371 |
T |
|
| Q |
212 |
tttgttcaagagtacactctttgaaaacaagacactcacactcctatc |
259 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
17517370 |
tttgttcaagagtgcactctttgaaaacaagacactcacactcctatc |
17517323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University