View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_high_2 (Length: 587)
Name: NF17578_high_2
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 96 - 571
Target Start/End: Original strand, 28833629 - 28834105
Alignment:
| Q |
96 |
cctcaaacaatctttgacatgataacttgctacctaagggacagtaaaaatttaactctcaaataagtattaaatgatgaaagaaacactaaagccaaat |
195 |
Q |
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| T |
28833629 |
cctcaaacaatctttgacatgataacttgctacctaagggacagtaaaaatttaactctcaaataagtattaaatgatgaaagaaatactaaagccaaat |
28833728 |
T |
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| Q |
196 |
tatataaagtgtgaacatattgctnnnnnnnn-gtttgctcatatcaacacactaatttactatttaattttagacttgaccttataatatatgattagc |
294 |
Q |
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| T |
28833729 |
tatataaagtgtgatcatattgctaaaaaaaaagtttggtcatatcaacacactaatttactatttaattttagacttgaccttataatatatgattagc |
28833828 |
T |
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| Q |
295 |
ataaagtcacaagggtataagtttagattaatccactagataattaagtttatgacaaagtatatattatatgagtgagggcaggcaaccggtacagaca |
394 |
Q |
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| T |
28833829 |
ataaagtcacaagggtataagtttagattaatccactagataattaagtttatgacaaagtatatattatatgagtgagggcaggcaacccgtacagaca |
28833928 |
T |
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| Q |
395 |
tagaaaccaaagcataattattcatgcacggcaaataggtatgatannnnnnnattgttctcgatattccctatagcttaatgtgacttaaattttggcc |
494 |
Q |
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| T |
28833929 |
tagaaaccaaggcataattattcatgcacggcaaataggtatgatatttttttattgttctcgatattccctatagcttaatgtgacttaaattttgacc |
28834028 |
T |
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| Q |
495 |
ctataaaagagcaagaggacattattttggttgtattattatgaacaatagaaatgaatgggacgtgatcatgaagt |
571 |
Q |
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| T |
28834029 |
ctataaaagagcaaggggacattattttggttgtattattatgaacaatagaaatgaatgggacgtgatcatgaagt |
28834105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 28833580 - 28833638
Alignment:
| Q |
16 |
aaaatcagactatacgatgtttttcaagtttacttttagcaagttttaacctcaaacaa |
74 |
Q |
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|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
28833580 |
aaaatcagactatacgatgtttttcaagtttagtttttgcaagttttaacctcaaacaa |
28833638 |
T |
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