View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_high_20 (Length: 239)
Name: NF17578_high_20
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_20 |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 17811789 - 17811982
Alignment:
| Q |
44 |
tagagcccgagggaagtatttttccaagtgacaacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagc |
143 |
Q |
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| T |
17811789 |
tagagcccgagggaagtatttttccaagtgataacacaacccaaaggctctccttcctctatgttctctcgccgccgtatccagctcatctctctaaagc |
17811888 |
T |
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| Q |
144 |
ccaatcacgccgccctcccttcttgttccgtccagatgtagatggtggtggttggcaatgcgacgatggtggtgggtatgccatccgcatcgca |
237 |
Q |
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| T |
17811889 |
ccaatcacgccgccctcccttcttgttccgtccagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgca |
17811982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 92 - 239
Target Start/End: Complemental strand, 32754784 - 32754637
Alignment:
| Q |
92 |
tctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtagatggtgg |
191 |
Q |
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|||||||||||| | |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32754784 |
tctccttcctctctcttctctcgcctccgtatccagctcatctctctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtagatggtgg |
32754685 |
T |
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| Q |
192 |
tggttggcaatgcgacgatggtggtgggtatgccatccgcatcgcagc |
239 |
Q |
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| T |
32754684 |
tggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagc |
32754637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 76 - 239
Target Start/End: Original strand, 46027690 - 46027853
Alignment:
| Q |
76 |
aacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtc |
175 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46027690 |
aacacaacacaaacgctctccttcctctccgttctctcgccgccgtatccagctcatctttctaaagcccaatcatgccgccctcccttcttgttccgtc |
46027789 |
T |
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| Q |
176 |
cagatgtagatggtggtggttggcaatgcgacgatggtggtgggtatgccatccgcatcgcagc |
239 |
Q |
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| T |
46027790 |
tagatgtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagc |
46027853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 719655 - 719813
Alignment:
| Q |
81 |
aacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagat |
180 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
719655 |
aacacaaacgctctccttcctctctgttctctcgccgccgtatccagctcatctctctaaagcccaatcacgttgccctcccttcttgttccgtccagat |
719754 |
T |
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| Q |
181 |
gtagatggtggtggttggcaatgcgacgatggtggtgggtatgccatccgcatcgcagc |
239 |
Q |
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| T |
719755 |
gtagatggtggtggttggcgatgcgacgatggtggtgggtatgccatccgcatcgcagc |
719813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 34852258 - 34852102
Alignment:
| Q |
81 |
aacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagat |
180 |
Q |
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| T |
34852258 |
aacacaaacgctctccttcctctctgttctctcgacgccgtatccagctcatctctctaaagcccaatcacgtcgccctcccttcttgttccgtccagat |
34852159 |
T |
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| Q |
181 |
gtagatggtggtggttggcaatgcgacgatggtggtgggtatgccatccgcatcgca |
237 |
Q |
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| T |
34852158 |
gtagatggttgtggctggcgatgcgacgatggtggtgggtatgccatccgcatcgca |
34852102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 61903 - 62025
Alignment:
| Q |
113 |
cgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtagatggtggtggttggcaatgcgacgatgg |
212 |
Q |
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|||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||| |
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| T |
61903 |
cgccgccgtatccaactcatctctcttaagcccaatcacgccgccctcccttcttgctccgttcaaatgtagatggtggtggttggcgatgcgacgatgg |
62002 |
T |
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| Q |
213 |
tggtgggtatgccatccgcatcg |
235 |
Q |
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| T |
62003 |
tagtcggtatgccatccgcatcg |
62025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 239
Target Start/End: Original strand, 32828605 - 32828743
Alignment:
| Q |
101 |
tctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtagatggtggtggttggca |
200 |
Q |
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||||||||||||||||||||||| || ||||||| || ||||||||||| || |||||| |||||||| |||||||||||||||| |||||||||| |
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| T |
32828605 |
tctttgttctctcgccgccgtattcaactcatctctccaaagcccaatcctgctaccctcctttcttgttttgtccagatgtagatggcggtggttggcg |
32828704 |
T |
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| Q |
201 |
atgcgacgatggtggtgggtatgccatccgcatcgcagc |
239 |
Q |
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| T |
32828705 |
atgcgacaatggtggtgggtatgccatccgaatcgcagc |
32828743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 15854020 - 15853941
Alignment:
| Q |
76 |
aacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccg |
155 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||| ||||||||||||| |
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| T |
15854020 |
aacacaacacaaacactctccttcctctctgttctctcgccgtcgtatccagctcatctctctaaatcccaatcacgccg |
15853941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 15853939 - 15853890
Alignment:
| Q |
186 |
tggtggtggttggcaatgcgacgatggtggtgggtatgccatccgcatcg |
235 |
Q |
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| T |
15853939 |
tggtggtggttggcgatgcgatgatggtggtgggtatgccattcgcatcg |
15853890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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