View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17578_high_25 (Length: 226)
Name: NF17578_high_25
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 225
Target Start/End: Complemental strand, 21522837 - 21522619
Alignment:
| Q |
7 |
cacaagatagtgaaagatacttaaattgtactaacagagaaaataggacacacatacttgttctagaatacgtcgatcagatctcccactgactatctcc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21522837 |
cacaagatagtgaaagatacttaaattgtactaacagagaaaataggacacacatacttgttctagaatacgtcgatcagatctcccactgactatctcc |
21522738 |
T |
|
| Q |
107 |
accaggaggattccgaatctgtaaacatctgatttacgtgtcagcggccccataaacacatcctctggtgccataggacatctgaaataaaacacacaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21522737 |
accaggaggattccgaatctgtaaacatctgatttacgtgtcagcggccccataaacacatcctctggtgccataggacatctgaaataaaacacacaac |
21522638 |
T |
|
| Q |
207 |
attgaagaaactaggcgat |
225 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
21522637 |
attgaagaaacaaggcgat |
21522619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 21529249 - 21529189
Alignment:
| Q |
89 |
ctcccactgactatctccaccaggaggattccgaatctgtaaacatctgatttacgtgtca |
149 |
Q |
| |
|
||||||||||||||||| || ||||| | ||| || ||||||| ||||| ||||||||||| |
|
|
| T |
21529249 |
ctcccactgactatctcaacaaggagtactccaaaactgtaaatatctgctttacgtgtca |
21529189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University