View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17578_high_27 (Length: 206)

Name: NF17578_high_27
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17578_high_27
NF17578_high_27
[»] chr5 (2 HSPs)
chr5 (44-185)||(17811789-17811930)
chr5 (92-185)||(32754691-32754784)
[»] chr3 (1 HSPs)
chr3 (76-185)||(46027690-46027799)
[»] chr6 (1 HSPs)
chr6 (81-185)||(719655-719759)
[»] chr4 (1 HSPs)
chr4 (81-185)||(34852154-34852258)
[»] chr1 (2 HSPs)
chr1 (76-155)||(15853941-15854020)
chr1 (101-185)||(32828605-32828689)
[»] scaffold0024 (1 HSPs)
scaffold0024 (113-185)||(61903-61975)


Alignment Details
Target: chr5 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 44 - 185
Target Start/End: Original strand, 17811789 - 17811930
Alignment:
Q  44 tagagcccgagggaagtatttttccaagtgacaacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagc 143  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  17811789 tagagcccgagggaagtatttttccaagtgataacacaacccaaaggctctccttcctctatgttctctcgccgccgtatccagctcatctctctaaagc 17811888  T
Q  144 ccaatcacgccgccctcccttcttgttccgtccagatgtaga 185  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  17811889 ccaatcacgccgccctcccttcttgttccgtccagatgtaga 17811930  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 92 - 185
Target Start/End: Complemental strand, 32754784 - 32754691
Alignment:
Q  92 tctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtaga 185  Q
    |||||||||||| | |||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32754784 tctccttcctctctcttctctcgcctccgtatccagctcatctctctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtaga 32754691  T

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Target: chr3 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 46027690 - 46027799
Alignment:
Q  76 aacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtc 175  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46027690 aacacaacacaaacgctctccttcctctccgttctctcgccgccgtatccagctcatctttctaaagcccaatcatgccgccctcccttcttgttccgtc 46027789  T
Q  176 cagatgtaga 185  Q
     |||||||||    
T  46027790 tagatgtaga 46027799  T

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Target: chr6 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 81 - 185
Target Start/End: Original strand, 719655 - 719759
Alignment:
Q  81 aacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagat 180  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  719655 aacacaaacgctctccttcctctctgttctctcgccgccgtatccagctcatctctctaaagcccaatcacgttgccctcccttcttgttccgtccagat 719754  T
Q  181 gtaga 185  Q
    |||||    
T  719755 gtaga 719759  T

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Target: chr4 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 81 - 185
Target Start/End: Complemental strand, 34852258 - 34852154
Alignment:
Q  81 aacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagat 180  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  34852258 aacacaaacgctctccttcctctctgttctctcgacgccgtatccagctcatctctctaaagcccaatcacgtcgccctcccttcttgttccgtccagat 34852159  T
Q  181 gtaga 185  Q
    |||||    
T  34852158 gtaga 34852154  T

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Target: chr1 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 15854020 - 15853941
Alignment:
Q  76 aacacaacacaaacgctctccttcctctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccg 155  Q
    |||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||    
T  15854020 aacacaacacaaacactctccttcctctctgttctctcgccgtcgtatccagctcatctctctaaatcccaatcacgccg 15853941  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 32828605 - 32828689
Alignment:
Q  101 tctttgttctctcgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtaga 185  Q
    ||||||||||||||||||||||| || ||||||| || |||||||||||  ||  |||||| ||||||||  |||||||||||||    
T  32828605 tctttgttctctcgccgccgtattcaactcatctctccaaagcccaatcctgctaccctcctttcttgttttgtccagatgtaga 32828689  T

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Target: scaffold0024 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 113 - 185
Target Start/End: Original strand, 61903 - 61975
Alignment:
Q  113 cgccgccgtatccagctcatctttctaaagcccaatcacgccgccctcccttcttgttccgtccagatgtaga 185  Q
    |||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||| || |||||||    
T  61903 cgccgccgtatccaactcatctctcttaagcccaatcacgccgccctcccttcttgctccgttcaaatgtaga 61975  T

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