View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_high_3 (Length: 523)
Name: NF17578_high_3
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 8934028 - 8934531
Alignment:
| Q |
1 |
ataatggactcagaattttgaactcattggatgagttactaaatagaactccaattaaaatgaaggcagtgaaatcaaggagaaaaggtcttcagaaaaa |
100 |
Q |
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| T |
8934028 |
ataatggactcagaattttgaactcattggatgagttactaaatagaactccaattaaaatgaaggcagtgaaatcaaggagaaaaggtcttcagaaaaa |
8934127 |
T |
|
| Q |
101 |
gaatgttatgccgaaaggtatcatagtttgtggcatgaatttgatctttgtaggaactgaggttggtccatggagcaaaactggtggtttaggagatgtt |
200 |
Q |
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| T |
8934128 |
gaatgttatgccgaaaggtatcatagtttgtggcatgaatttgatctttgtaggaactgaggttggtccatggagcaaaactggtggtttaggagatgtt |
8934227 |
T |
|
| Q |
201 |
cttggtggtcttccaccagtattagcagtaagcttactgttatggtttgccttatatttatttatctatatactttggagaaatgctaacctgacactct |
300 |
Q |
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| T |
8934228 |
cttggtggtcttccaccagtattagcggtaagcttactgttatggtttgccttatatttatttatctatatactttggagaaatgctaacctgacactct |
8934327 |
T |
|
| Q |
301 |
ttttgacgtttagtaattatgtattgacagtataaaaatttatacgaacattgaatcatttttcactttaatctcacatcgtaatgttacttcctaaaac |
400 |
Q |
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| T |
8934328 |
ttttgacgtttagtaattatgtattgacagtataaaaatttatacgaacattgaatcatttttcactttaatctcaaatcgtaatgtcacttcctaaaac |
8934427 |
T |
|
| Q |
401 |
atatgcaagatatctacgttgtaaattaatgattggtcgcctttttgaaaaacttttttacattgtcagtgcatagctattaaatatctctttttggcat |
500 |
Q |
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| T |
8934428 |
atatgcaagatatctacgttgtaaatt-atgattggtcgcctttttgaaaaacttttttacattgtcagtgcgtagctattaaatatctctttttggcat |
8934526 |
T |
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| Q |
501 |
actaa |
505 |
Q |
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| T |
8934527 |
actaa |
8934531 |
T |
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