View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_high_5 (Length: 430)
Name: NF17578_high_5
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_5 |
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| [»] scaffold0804 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 14627458 - 14627842
Alignment:
| Q |
11 |
cacagaccttgttcttcttcaatgtcttcttcttcttggacaccattggaggatagtggtaataaaaaatcaaagaaagtatggatatggacaaagaaca |
110 |
Q |
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| T |
14627458 |
cacaaaccttgttcttcttcaatgtcttcttcttcttggacaccattggaggatagtggtaataaaaaatcaaagaaagtatggatatggacaaagaaca |
14627557 |
T |
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| Q |
111 |
agcaggttatgactgcagctgttgaaagaggatggaatactttcattttcccatctaaccttcctcatcttgccaatgattggtcatgtattttacatac |
210 |
Q |
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| T |
14627558 |
agcaggttatgactgcagctgttgaaagaggatggaatactttcattttcccatctaaccttcctcatcttgccaatgattggtcatgtattttacatac |
14627657 |
T |
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| Q |
211 |
a--nnnnnnnnnnnnaacctttttcattatttttcaaatcaaattgttttattattagtataacaaagtgaatcactaatttattttgtctttaaaattt |
308 |
Q |
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| T |
14627658 |
actctctctctctctaacctttttcattatttttcaaatcaaattgttttattattagtataacaaagtgaatcactaa-------------------tt |
14627738 |
T |
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| Q |
309 |
taggaggggaggatggaacaatctggttatgaaattaaccaaattcttaaat-gtttgtgaaattgaaagtcttcaattacattagtcttggtcatgtat |
407 |
Q |
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| T |
14627739 |
taggagggga----ggaacaatctggttatgaaattaaccaaattcttaaatggtttgtgaaattgaaagtcttcaattacattagtcttggtcatgtat |
14627834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0804 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0804
Description:
Target: scaffold0804; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 11 - 115
Target Start/End: Complemental strand, 2111 - 2007
Alignment:
| Q |
11 |
cacagaccttgttcttcttcaatgtcttcttcttcttggacaccattggaggatagtggtaataaaaaatcaaagaaagtatggatatggacaaagaaca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2111 |
cacaaaccttgttcttcttcaatgtcttcttcttcttggacaccattggaggatagtggtaataaaaaatcaaagaaagtatggatatggacaaagaaca |
2012 |
T |
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| Q |
111 |
agcag |
115 |
Q |
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||||| |
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| T |
2011 |
agcag |
2007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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