View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_high_8 (Length: 318)
Name: NF17578_high_8
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 49269807 - 49269510
Alignment:
| Q |
1 |
atcaatctctatataaagaataatgtaattaacttagaaaaacacaaaacaaacatcataagccacaaacaactagagaaacaatgaaattcattcaact |
100 |
Q |
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| T |
49269807 |
atcaatctctatataaagaataatgtaattaacttagaaaaacacaaaacaaacatcataagccacaaacaactagagaaacaatgaaattcattcaact |
49269708 |
T |
|
| Q |
101 |
atgtttcctaatttctctcttggtgttgctcaacacaaaggcactacaaggagctaaaccagagagagtagtagacagacacggtaagcctcttgagtca |
200 |
Q |
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| T |
49269707 |
atgtttcctaatttctctcttggtgctgctcaacacaaaggcactacaaggagctaaaccagatagagtagtagacagacacggtaagcctcttgagtca |
49269608 |
T |
|
| Q |
201 |
ggaaaaggttactatgtatggcaattttgggctcatgatattggaggcttaacattgggctcaacaagaaacaaaacatgtcctcttgatgtaattcg |
298 |
Q |
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| T |
49269607 |
ggaaaaggttactatgtatggcaattttgggctcatgatattggaggcttaacattgagctcaacaagaaacaaaacatgtcctcttgatgtaattcg |
49269510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 77 - 292
Target Start/End: Complemental strand, 49278099 - 49277887
Alignment:
| Q |
77 |
agaaacaatgaaattcattcaactatgtttcctaatttctctcttggtgttgctcaacacaaaggcactacaaggagctaaaccagagagagtagtagac |
176 |
Q |
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| T |
49278099 |
agaaacaatgaaattcattcaactcttttgcttcctttctctctcagcgttgttcaacacaaaggcactacaaggagataaaccagaggcagtagtagac |
49278000 |
T |
|
| Q |
177 |
agacacggtaagcctcttgagtcaggaaaaggttactatgtatggcaattttgggctcatgatattggaggcttaacattgggctcaacaagaaacaaaa |
276 |
Q |
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| T |
49277999 |
aaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggc---tgacaatggaggcataacattaggacaaacaagaaacaaaa |
49277903 |
T |
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| Q |
277 |
catgtcctcttgatgt |
292 |
Q |
| |
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|||| ||||||||||| |
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| T |
49277902 |
catgccctcttgatgt |
49277887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 295
Target Start/End: Complemental strand, 49272176 - 49271961
Alignment:
| Q |
77 |
agaaacaatgaaattcattcaactatgtttcctaatttctctcttggtgttgctcaacacaaaggcactacaaggagctaaaccagagagagtagtagac |
176 |
Q |
| |
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|||||| ||||||||||||||||| | || | | |||||||||| || ||| ||||||||||| |||||||||||||| |||||||| |||||||||| |
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| T |
49272176 |
agaaaccatgaaattcattcaactcttttgcttcctttctctcttagttttgttcaacacaaagccactacaaggagctgaaccagaggcagtagtagac |
49272077 |
T |
|
| Q |
177 |
agacacggtaagcctcttgagtcaggaaaaggttactatgtatggcaattttgggctcatgatattggaggcttaacattgggctcaacaagaaacaaaa |
276 |
Q |
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| ||| ||||| |||||| | |||| |||||||||| |||| | | ||||||| || | ||||||| | ||||| || ||||||||||||| |
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| T |
49272076 |
aaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggc---cgacaatggaggcattacattaggacacacaagaaacaaaa |
49271980 |
T |
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| Q |
277 |
catgtcctcttgatgtaat |
295 |
Q |
| |
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|||| |||||||||||||| |
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| T |
49271979 |
catgccctcttgatgtaat |
49271961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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