View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_low_1 (Length: 624)
Name: NF17578_low_1
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 612
Target Start/End: Original strand, 14544773 - 14545363
Alignment:
| Q |
18 |
gcatctaatatcatgaaagctaaaattgcttctcatccttattatcctcgccttcttcaagcctatatcgattgtcaaaaggtaaa-ttaaactaagttt |
116 |
Q |
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| T |
14544773 |
gcatctaatatcatgaaagctaaaattgcttctcatccttattaccctcgccttcttcaagcctatatcgattgtcaaaaggtaaaattaaactaagtct |
14544872 |
T |
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| Q |
117 |
gatcgtaactactctgcaacgtgacggtcttaatctagtttaacgaatttctgcaattgctaataaattgtttaggttggtgctcctcctgaaattgcaa |
216 |
Q |
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| T |
14544873 |
gatcgtaactactctgcaacgtgacggtcttaatccagtttaacgaatttctataattgctaataaattgtttaggttggtgctcctcctgaaattgcaa |
14544972 |
T |
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| Q |
217 |
gtttattggaagagattcgaagagaaaacgatatgtgtaaaagagacgttgttgtttccacgtgttttggagccgatcccgagcttgatgaatttatggt |
316 |
Q |
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| T |
14544973 |
gtttattggaggagattcgaagagaaaacgatatgtgtaaaagagacgttgttgtttccacgtgttttggagccgatcccgagcttgatgaatttatggt |
14545072 |
T |
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| Q |
317 |
-ccccccttaaatcctttctttctttctttgtttcgctcgcacgaacacaaaaatatattta-nnnnnnnattttattgaaaataaataaattaaatgca |
414 |
Q |
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| T |
14545073 |
cccccccttaaatc----ctttctttctttgtttcgcttgcacgaacacaaaaatatttatattttttttattttattgaaaataaataaattaaatgca |
14545168 |
T |
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| Q |
415 |
actttattgatgttgattatggttgtttcaggaaagttattgtgacatgcttgtgaagtataaatcagaccttactcgaccttttgacgaagctaaaacg |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14545169 |
actttattgatgttgattatggttgtttcaggaaagttattgtgacatgcttgtgaagtataaatcagaccttactcgaccttttgacgaagctacaacg |
14545268 |
T |
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| Q |
515 |
tttctgaacaagatcgaaactcaactcagtcatctctgcactggtggtggtgctgctgctgcttcacttccaactgcttctggtttgtttttcttctc |
612 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14545269 |
tttctgaacaagatcgaaactcaactcagtcatctctgcac---tggtggtgctgctgctgcttcacttccaactgcttctggtttgtttttcttctc |
14545363 |
T |
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