View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_low_14 (Length: 266)
Name: NF17578_low_14
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 128 - 246
Target Start/End: Original strand, 4463586 - 4463704
Alignment:
| Q |
128 |
aactttgtgaggtcaagagtctggcacatccacgtgcttattgaacaataatctcatgaagtatatacaaatcgactcctatggccgaaattcttctcat |
227 |
Q |
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| T |
4463586 |
aactttgtgagatcaagagtctggcacatccacgtgcttattgaacaataatctcatgaagtatatacaaatctactcctatggccgaaattcttctcat |
4463685 |
T |
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| Q |
228 |
attaattaatggaaggacc |
246 |
Q |
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| T |
4463686 |
attaattaatggaaggacc |
4463704 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 111
Target Start/End: Original strand, 4463133 - 4463195
Alignment:
| Q |
49 |
attgacatgcatttaataccctccaattgttgcgtaactataaggaatgggcatcccagttgt |
111 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
4463133 |
attgacatgcatttaataccctccaaatgttgcgtaactataaggaatgggcatcctagttgt |
4463195 |
T |
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