View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17578_low_15 (Length: 255)
Name: NF17578_low_15
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 8167488 - 8167256
Alignment:
| Q |
18 |
gtggttaccctaaccctaacaccgtcattaaacactttctcgatagggaaaacccagtcatcgacactgacaaaaggaagcaagat---gagggcgtagt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
8167488 |
gtggttaccctaaccctaacaccgtcattaaacactttctcgatagggaaaacccagtcatcgacgctgacaaaaggaagcaggatcatgagggcgtagt |
8167389 |
T |
|
| Q |
115 |
tgaaaccttaaggtttcaacatgaggcaattgaagaacggctggaagaagagaataattatttagaaggaataaaagagagaaacaagagtagttcatgt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8167388 |
tgaaaccttaaggtttcaacatgaggcaattgaagaacggctgaaagaagagaataattatttagaaggtgtaaaagagagaaacaagagtagttcatgt |
8167289 |
T |
|
| Q |
215 |
ttttcttgctggtggggtcattctattgatgat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8167288 |
ttttcttgctggtggggtcattctattgatgat |
8167256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 23 - 247
Target Start/End: Complemental strand, 50707550 - 50707326
Alignment:
| Q |
23 |
taccctaaccctaacaccgtcattaaacactttctcgatagggaaaacccagtcatcgacactgacaaaaggaagcaagatgagggcgtagttgaaacct |
122 |
Q |
| |
|
|||||||||| | |||| ||||||||||||||| |||||| |||||||||||||||| ||||||| ||| |||||||||||||| | | ||||||||| |
|
|
| T |
50707550 |
taccctaaccatgacactgtcattaaacactttttcgataaggaaaacccagtcatcaacactgaaaaagggaagcaagatgagtacacaattgaaacct |
50707451 |
T |
|
| Q |
123 |
taaggtttcaacatgaggcaattgaagaacggctggaagaagagaataattatttagaaggaataaaagagagaaacaagagtagttcatgtttttcttg |
222 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||| |||||||||| ||| ||||| ||| ||||||||| |||||| ||||||||||| || ||| |
|
|
| T |
50707450 |
caaggcttcaacatgagacaattcaagaacggctgaaagaagagaagaataatttacaagctgtaaaagagacaaacaacagtagttcatgccttccttc |
50707351 |
T |
|
| Q |
223 |
ctggtggggtcattctattgatgat |
247 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
50707350 |
ttggtgggatcattctattgatgat |
50707326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University