View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_low_22 (Length: 236)
Name: NF17578_low_22
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 48953059 - 48952839
Alignment:
| Q |
1 |
atatttcccgaagaagggcttgatagaagcacatgcgaggatataaatgttgcttgcattttctaggacttgaatgaaaatcttccaagtgattaaggtt |
100 |
Q |
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| T |
48953059 |
atatttcccgaagaagggcttgatagaagcacatgcgaggatataaatgttgcttgcattttctaggacttgaatgaaaatcttccaagtgattaaggtt |
48952960 |
T |
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| Q |
101 |
tgtaaggcaagaaagcaatagctaggtttgaattgcaatctgtatttggaaggtattgtggaatatttttatgattctgattatgttgtgcatatatata |
200 |
Q |
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| T |
48952959 |
tgtaaggcaagaaagcaatagctaggtttgaattgcaatctgtatttggaaggtattgtggaatatttttatgatgctgattatgttgtgcatatatata |
48952860 |
T |
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| Q |
201 |
agaaggtgccacccatataag |
221 |
Q |
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| T |
48952859 |
agaaggtgccacccatataag |
48952839 |
T |
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