View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_low_24 (Length: 227)
Name: NF17578_low_24
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_low_24 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 21522346 - 21522572
Alignment:
| Q |
1 |
taactggcaagcacggtgtaggatatgcatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcatagggatatacga |
100 |
Q |
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| T |
21522346 |
taactggcaagcacggtgtaggatatgtatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcacagggatatacga |
21522445 |
T |
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| Q |
101 |
gcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtcttgcaaaccttattcgacaagacatcactcgtctcatctcattgt |
200 |
Q |
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| T |
21522446 |
gcaagcaatatagtcctcgatgaagaccttaaaccgaagatttcagattttggtcttgcaaaccttattcgacaagatgtcactcgtctcatctcattgt |
21522545 |
T |
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| Q |
201 |
aagtgtgtacaaattaatttggaagca |
227 |
Q |
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| T |
21522546 |
aagtgtgtacaaattaatttggaagca |
21522572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 21528249 - 21528406
Alignment:
| Q |
5 |
tggcaagcacggtgtaggatatgcatcggagttgcacgtggacttgaatttctacatgatcaagaacaaccaaataatgttcatagggatatacgagcaa |
104 |
Q |
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| T |
21528249 |
tggcaaacacgacgtaggatatgccttggagttgcacgtggacttgcctttctccatgaggaagtactgccacatattgttcacagggatataaaagcaa |
21528348 |
T |
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| Q |
105 |
gcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtcttgcaaa |
162 |
Q |
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| T |
21528349 |
gcaatattctcctcgacaaagatcttacacctaagatttcagatttcggtcttgcaaa |
21528406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 27005229 - 27005156
Alignment:
| Q |
84 |
ttcatagggatatacgagcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtctt |
157 |
Q |
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| T |
27005229 |
ttcatagggatacaaaagcaagcaatattctccttgacaaagatcttacaccgaagatttcggattttggtctt |
27005156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 84 - 170
Target Start/End: Original strand, 29364104 - 29364190
Alignment:
| Q |
84 |
ttcatagggatatacgagcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtcttgcaaaccttattc |
170 |
Q |
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| T |
29364104 |
ttcatagggatataaaagctagcaatattctccttgacaaagaccttacaccgaagatttctgattttggtcttgcaaagcttattc |
29364190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 168
Target Start/End: Original strand, 29357240 - 29357324
Alignment:
| Q |
84 |
ttcatagggatatacgagcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtcttgcaaaccttat |
168 |
Q |
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| T |
29357240 |
ttcatagggatataaaagcaagcaatattctccttgacaaagaccttacacccaagatttccgactttggtcttgcaaagcttat |
29357324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 35536014 - 35536087
Alignment:
| Q |
84 |
ttcatagggatatacgagcaagcaatatagtcctggataaagaccttaaaccgaagatttcagattttggtctt |
157 |
Q |
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| T |
35536014 |
ttcatagggatacaaaagcaagcaatattctccttgacaaagatcttacaccgaagatttcggattttggtctt |
35536087 |
T |
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