View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17578_low_4 (Length: 443)
Name: NF17578_low_4
Description: NF17578
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17578_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 177 - 432
Target Start/End: Original strand, 6604082 - 6604336
Alignment:
| Q |
177 |
tttatatcaactaatactaatgcttaaggtcttatattattatta---ttttttgaatggcactaaggtcttatattagacattaacgattgctcacaca |
273 |
Q |
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| T |
6604082 |
tttatatgaactaatactaatgct-aaggtcttatattattttttattttttttgaatggcactaaggtcttatattagacattaacgattgctcacaca |
6604180 |
T |
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| Q |
274 |
aagtgattgatannnnnnnnatttccccaccattttgtgtaatggtatcaatggtattatatgnnnnnnnncttctaagatgagtttcgtacgactctac |
373 |
Q |
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| T |
6604181 |
aagtgattgatattttttttatttccccgccattttgtgtaatgggatcaatggtattatatgttttttatcttctaagatgagtttcgtacgact---c |
6604277 |
T |
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| Q |
374 |
tactacacctgcattttctacttaagcgcaagtcttatgtttcaaaactttatcttcat |
432 |
Q |
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| T |
6604278 |
tactacacctgcattttctacttaagcgcaagtcttatgtttcaaaactttatcttcat |
6604336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 6603102 - 6603263
Alignment:
| Q |
19 |
ctaggtcgattcaatcagggaagtaccaaaatttgatcttccacaatccatagctccttactttttgaccaaactctaaattacggaaaacg-nnnnnnn |
117 |
Q |
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| T |
6603102 |
ctaggtcgattcaattagggaagtatcgaaatttgatcttccacaatccatagctacttactttttgatcgaactttaaattacggaaaatgtttttttt |
6603201 |
T |
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| Q |
118 |
nnnnnnnaaaaaccggaagaccatataagttgacttttcaacaaaaataacattgagatttt |
179 |
Q |
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| T |
6603202 |
tctttttaaaaaccggaagaccaaataagttgacttttcaacaaaaataacattgagatttt |
6603263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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