View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17579_low_2 (Length: 238)
Name: NF17579_low_2
Description: NF17579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17579_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36299132 - 36299351
Alignment:
| Q |
1 |
tgacatgattcaaactggtgttaacccggaaacatatacttttaatcttttgatacagtcgttatgtgaatctaacgcgcttgatcatgcacgtgaactg |
100 |
Q |
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| T |
36299132 |
tgacatgattcaaactggtgttaacccggaaacatatacttttaatcttttgatacagtcgttatgtgaatctaacgcgcttgatcatgcacgtgaactg |
36299231 |
T |
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| Q |
101 |
tttgataaaatgtcggaaaagggttgtcagcctaataagttcactgttgggatacttgttcgtgggttttgtcgagctgggagaacgaaacaggctttgg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36299232 |
tttgataaaatgtctgaaaagggttgtcagcctaataagttcactgttgggatacttgttcgtgggttttgtcgagctgggagaactaaacaggctttgg |
36299331 |
T |
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| Q |
201 |
agtttgttgatgggaagatg |
220 |
Q |
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|||||||||||||||||||| |
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| T |
36299332 |
agtttgttgatgggaagatg |
36299351 |
T |
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