View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17579_low_3 (Length: 236)
Name: NF17579_low_3
Description: NF17579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17579_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 44563988 - 44564205
Alignment:
| Q |
16 |
gtttcctcagatttctctatatacctgatcatgctactcacaaccttcattccttcacagctcactaccttcattctctcnnnnnnnccttcattacaca |
115 |
Q |
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| T |
44563988 |
gtttcctcagatttctctatataccttatcatgctactcacaaccttcattccttcacagctcactaccttcattctctcaaaaaaaccttcattacaca |
44564087 |
T |
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| Q |
116 |
aatggcttcttcttcttcatgggctcagaaaactggtttcaagccagtattctccgccgagaccaaagccggtcagtcttcgtccagacaacctgacctt |
215 |
Q |
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| T |
44564088 |
aatggcttc---ttcttcatgggcccagaaaactggtttcaagccagtattctccgccgagaccaaagccggtcagtctttgtccagacaacctgacctt |
44564184 |
T |
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| Q |
216 |
gaagcaagtcctgttgttagc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
44564185 |
gaagcaagtcctgttgttagc |
44564205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 188
Target Start/End: Complemental strand, 36036773 - 36036712
Alignment:
| Q |
127 |
cttcttcatgggctcagaaaactggtttcaagccagtattctccgccgagaccaaagccggt |
188 |
Q |
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|||||||||||||| ||||||| ||||||| |||| |||||||| ||||||||| |||||| |
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| T |
36036773 |
cttcttcatgggctaagaaaaccggtttcaggccaaaattctccggcgagaccaatgccggt |
36036712 |
T |
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