View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17579_low_4 (Length: 232)

Name: NF17579_low_4
Description: NF17579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17579_low_4
NF17579_low_4
[»] chr6 (13 HSPs)
chr6 (18-216)||(30955077-30955275)
chr6 (18-216)||(30944817-30945015)
chr6 (18-213)||(31145569-31145764)
chr6 (20-213)||(31171882-31172075)
chr6 (18-217)||(31201430-31201629)
chr6 (18-217)||(30992304-30992503)
chr6 (18-217)||(30960822-30961021)
chr6 (18-216)||(31189624-31189822)
chr6 (18-216)||(31224327-31224525)
chr6 (18-217)||(31214058-31214257)
chr6 (18-157)||(30986140-30986279)
chr6 (18-217)||(31229608-31229806)
chr6 (18-126)||(31131447-31131550)
[»] chr8 (1 HSPs)
chr8 (86-204)||(44035561-44035679)
[»] chr7 (2 HSPs)
chr7 (167-217)||(31541235-31541285)
chr7 (165-217)||(31618483-31618535)
[»] chr1 (1 HSPs)
chr1 (167-216)||(49725148-49725197)


Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 30955077 - 30955275
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30955077 atgaatttatgtctaatggttcccttgacaaatttatttacaataagggacctgaaaccattgcatctttgagttgggataatttctatcaaattgccaa 30955176  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaattt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955177 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaattt 30955275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 30944817 - 30945015
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30944817 atgaatttatgtctaatggttcccttgacaaatttatttacaataagggacctgaaaccattgcatctttaagttgggataatttgtatcaaattgccaa 30944916  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaattt 216  Q
    ||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  30944917 agggatagctcgaagtttggagtatttgcatagggggtgtaatatccggattttacattttgacataaaaccgcataacattcttttagatgaaaattt 30945015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 31145764 - 31145569
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||    
T  31145764 atgaatttatgtccaatggttcacttgacaaatttatttacaataagggacctgaaacaattgcatctttgagttgggagaatttgtatcaaattgcaaa 31145665  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaa 213  Q
    |||||||||||| ||  | ||||| |||||||| |||||||  || || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  31145664 agggatagctcgtgggctagagtacttgcatagaggatgtaccactcgaattttacattttgacataaaaccacataacattcttttagatgaaaa 31145569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 31172075 - 31171882
Alignment:
Q  20 gaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaaag 119  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  31172075 gaatttatgtcaaatggttctcttgacaaatttatttacaataagggacctgaaacaattgcatctttgagttgggagaatttgtatcaaattgcaaaag 31171976  T
Q  120 ggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaa 213  Q
    |||||||||| ||  | ||||| |||||||| |||||||  || || |||||||||||||| ||||||||||||||||||||||||||||||||    
T  31171975 ggatagctcgtgggctagagtacttgcatagaggatgtaccactcgaattttacattttgacataaaaccacataacattcttttagatgaaaa 31171882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 31201629 - 31201430
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||||||||| |||||||| ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  31201629 atgaatttatgtccaatggttctcttgacaaacttatttacaataagggaccagaaaccattgcatctttgagttgggataatttgtatcaaattgcaaa 31201530  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttt 217  Q
    ||| |||||||| ||  | ||||| |||||||| |||||||  || || ||||||||||| || |||||||||||||| |||||||||||||| ||||||    
T  31201529 aggaatagctcgtggactagagtacttgcatagaggatgtaccactcgaattttacatttcgacataaaaccacataatattcttttagatgagaatttt 31201430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 30992304 - 30992503
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||||| ||    
T  30992304 atgaatttatgtctaatggttcccttgacaaatttatatacaataaggaacctgaaacgattgcatctttaagttgggataatatgcatcaaattgcgaa 30992403  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttt 217  Q
    ||||||||| || ||  | || ||||||||||| ||||||   || || |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  30992404 agggatagcccgtgggctagaatatttgcatagaggatgtgccactcgaattttacattttgacataaaaccacataacattcttttagatgagaatttt 30992503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 30960822 - 30961021
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||||||||| |||||||| |||||||||| |||||||||| |||||||||||||||||| |||||| ||||||||| || || |||||||||| ||    
T  30960822 atgaatttatgtccaatggttctcttgacaaatatatttacaataagggacctgaaaccattgtatctttaagttgggatgatatgcatcaaattgcgaa 30960921  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttt 217  Q
    ||||||||| || ||  | || ||||||||||| ||||||  ||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  30960922 agggatagcccgtgggctagaatatttgcatagaggatgtgctactcgaattttacattttgacataaaaccacataacattcttttagatgagaatttt 30961021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 31189822 - 31189624
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||||||||| |||||||| |||||||||||||| |||||  ||||||| || |  ||| |||||||||||||||||||||||||||||||||| ||    
T  31189822 atgaatttatgtcaaatggttctcttgacaaatttatctacaacaagggaccagagagaattacatctttgagttgggataatttgtatcaaattgcaaa 31189723  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaattt 216  Q
    ||||||||| || ||  | ||||| |||||||| |||||||  ||  | ||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  31189722 agggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattcttttagatgagaattt 31189624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 31224327 - 31224525
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||||||||| |||||||| |||||||||||||| |||||| ||| || |||||| ||||||||||||||||||||||| |||||| ||||||| ||    
T  31224327 atgaatttatgtcaaatggttctcttgacaaatttatctacaataaggaacttgaaacaattgcatctttgagttgggataaattgtataaaattgcaaa 31224426  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaattt 216  Q
    |||||||||||| ||  | ||||| |||||| | |||||||  ||  | |||||||||||||| ||||||||||| ||||| ||||||||||| |||||    
T  31224427 agggatagctcgtggactagagtacttgcatggaggatgtaccactagaattttacattttgacataaaaccacacaacatccttttagatgataattt 31224525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 31214058 - 31214257
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||| |||||||||||||| |||||||||||||||||||| | |  || |||||||  |  |||| |||||||||| | | | ||| ||||||| ||    
T  31214058 atgaattcatgtctaatggttcgcttgacaaatttatttacaacgcgcaacatgaaacctatcaatctctgagttgggagattctttatgaaattgctaa 31214157  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttt 217  Q
    ||||||||||||||| ||||||||  ||||||| ||||| | ||| || ||||||||||||||||||||||||||||| ||| | |||||||||||||||    
T  31214158 agggatagctcgagggttggagtacctgcatagaggatgcagtactcgaattttacattttgatataaaaccacataatattttattagatgaaaatttt 31214257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 30986140 - 30986279
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||| ||||||||||| |||||||||||| || |||||||||| ||    
T  30986140 atgaatttatgtctaatggttcccttgacaaatttatatacaataaggaacctgaaacgattgcatctttaagttgggataatatgcatcaaattgcgaa 30986239  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgt 157  Q
    ||||||||| || ||  | || ||||||||||| ||||||    
T  30986240 agggatagcccgtgggctagaatatttgcatagaggatgt 30986279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 31229608 - 31229806
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    ||||||| ||||| |||||||||||||| ||||| || |||||  |||||||||| || ||| ||||| |||||||||| | | | ||||||||||| ||    
T  31229608 atgaattaatgtcgaatggttcccttgaaaaattcatctacaaaaagggacctgagac-attccatctctgagttgggacattctttatcaaattgcgaa 31229706  T
Q  118 agggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataaaaccacataacattcttttagatgaaaatttt 217  Q
    |||||||||||||||  | ||||| ||||||| ||||||||  ||  | || ||||||||||| || |||||||||||||| || ||| |||| ||||||    
T  31229707 agggatagctcgagggcttgagtacttgcataagggatgtagcacttgaatcttacattttgacatcaaaccacataacatcctcttatatgagaatttt 31229806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 126
Target Start/End: Complemental strand, 31131550 - 31131447
Alignment:
Q  18 atgaatttatgtctaatggttcccttgacaaatttatttacaatgagggacctgaaaccattgcatctttgagttgggataatttgtatcaaattgccaa 117  Q
    |||||||||||||||||||||| |||||||||||||| |||||| ||||||||||| ||||  ||||     | || ||||||||| |||||||||| ||    
T  31131550 atgaatttatgtctaatggttctcttgacaaatttatctacaataagggacctgaatccatcacatc-----gctgagataatttgcatcaaattgcgaa 31131456  T
Q  118 agggatagc 126  Q
    |||||||||    
T  31131455 agggatagc 31131447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 204
Target Start/End: Original strand, 44035561 - 44035679
Alignment:
Q  86 ttgagttgggataatttgtatcaaattgccaaagggatagctcgaggtttggagtatttgcataggggatgtaatacccggattttacattttgatataa 185  Q
    ||||||||||| |||||  | || ||||| | |||||||||||||||  | ||||| |||||||  || || || ||  ||||||| ||||| || || |    
T  44035561 ttgagttgggagaatttacaccagattgcaatagggatagctcgaggactagagtacttgcataaagggtgcaacactaggatttttcatttcgacatta 44035660  T
Q  186 aaccacataacattctttt 204  Q
    |||||||||||||||||||    
T  44035661 aaccacataacattctttt 44035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 31541285 - 31541235
Alignment:
Q  167 attttacattttgatataaaaccacataacattcttttagatgaaaatttt 217  Q
    ||||| ||| ||||||| |||||||| ||||||||||| ||||||||||||    
T  31541285 attttgcatcttgatatcaaaccacaaaacattcttttggatgaaaatttt 31541235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 31618535 - 31618483
Alignment:
Q  165 ggattttacattttgatataaaaccacataacattcttttagatgaaaatttt 217  Q
    ||||| ||||| ||||||||||||| || ||||||||||| |||||| |||||    
T  31618535 ggattctacatcttgatataaaacctcaaaacattcttttggatgaagatttt 31618483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 49725148 - 49725197
Alignment:
Q  167 attttacattttgatataaaaccacataacattcttttagatgaaaattt 216  Q
    ||||| |||||||| |||||||| |||||||||||||| ||||| |||||    
T  49725148 attttgcattttgacataaaacctcataacattcttttggatgagaattt 49725197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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