View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17579_low_5 (Length: 225)
Name: NF17579_low_5
Description: NF17579
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17579_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 210
Target Start/End: Original strand, 34727296 - 34727495
Alignment:
| Q |
18 |
gaaccacttccaacgggcgtatcatacaacccgaaattgatttctcggtcaagttccatagtccagtttggtggttgtaatttttggtttttagttgctt |
117 |
Q |
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| T |
34727296 |
gaaccacttccaacgggcgtatcatacaacccgaaattgatttctgggtcaagttccatagtccagtttggtggttgtaatttttggttttcagttgctt |
34727395 |
T |
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| Q |
118 |
ttgtatcgagtaatggtaggtgatcccattcccactgtgaaga--gagatattgcattcaagtccatc-----agaaaagcttagaaattaggtaatcta |
210 |
Q |
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| T |
34727396 |
ttgtatcgagtaatggtaggtgatcccattcccactgtgaagagggagatattgcattcaagtccatcagaaaagaaaagcttagaaattaggtaatcta |
34727495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 34731533 - 34731725
Alignment:
| Q |
20 |
accacttccaacgggcgtatcatacaacccgaaattgatttctcggtcaagttccatagtccagtttggtggttgtaatttttggtttttagttgctttt |
119 |
Q |
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| T |
34731533 |
accacttccaccgggtgtatcgaacaacccgacattgatttctcggtcttgttcgatactccagcttggtggttgtaattttggatattcagttgctttt |
34731632 |
T |
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| Q |
120 |
gtatcgagtaatggtaggtgatcccattcccactgtgaaga--gagatattgcattcaagtccatcagaaaagcttagaaattaggtaatcta |
210 |
Q |
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| T |
34731633 |
gcattgaagaatgattggtgctcccagtcccactgggaagagggagatattgcattcaagtccatcagaaaagcttagaaattaggtaatcta |
34731725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 34722256 - 34722449
Alignment:
| Q |
19 |
aaccacttccaacgggcgtatcatacaacccgaaattgatttctcggtcaagttccatagtccagtttggtggttgtaatttttggtttttagttgcttt |
118 |
Q |
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||||||||||| |||||||| |||||| || ||| |||||||||| | || ||| |||||||||||||||||||||||| |||| ||| ||||| |
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| T |
34722256 |
aaccacttccagttggcgtatcgaacaaccagacattattttctcggtctaatttgatactccagtttggtggttgtaattttttattttcagtagcttt |
34722355 |
T |
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| Q |
119 |
tgtatcgagtaatggtaggtgatcccattcccactgtgaaga--gagatattgcattcaagtccatcagaaaagcttagaaattaggtaatcta |
210 |
Q |
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| T |
34722356 |
tgtatccggtaatggtaggtgatcccattcccactgtgaagagggagattttgcattcaaatccatcagaaaagctcagaagttagggaatcta |
34722449 |
T |
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