View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757_high_13 (Length: 254)
Name: NF1757_high_13
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757_high_13 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 48 - 254
Target Start/End: Complemental strand, 42493166 - 42492964
Alignment:
| Q |
48 |
tgaattaaagtttcttggatgtgtaggtaattatcataaaggaaattagaaccatagaaaaattgaggaatgtgtaaaaaatctttagggaaaatttata |
147 |
Q |
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| T |
42493166 |
tgaattaaagtttcttggatgtgtaggtaattatcataaaggaaattagaaccatagaaaaattgaggaatgtgtaaaaaatctttagggaaaatttat- |
42493068 |
T |
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| Q |
148 |
tattgcttgcatctgaagtttgaagattttgatatgactacataaaagctacaattggttgctaatatgtatctagttggttggttagaaacttctaaaa |
247 |
Q |
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| T |
42493067 |
---tgcttgcatctgaagtttgaagattttgatatgactacataaaagctacaattggttgctaatatgtatctagttggttggttagaaacttctaaaa |
42492971 |
T |
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| Q |
248 |
agctaga |
254 |
Q |
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| T |
42492970 |
agctaga |
42492964 |
T |
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