View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757_high_18 (Length: 219)
Name: NF1757_high_18
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757_high_18 |
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| [»] scaffold0073 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 6986731 - 6986918
Alignment:
| Q |
12 |
gagaagaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
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|||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6986731 |
gagatgaagaaattcaagaaaattttggtatcgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
6986830 |
T |
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| Q |
112 |
ttttgattcgcagttttcgctgttccttcttatgttgtctacctgcctggttgtttaattgatgtttcttctaaatgggattttccaa |
199 |
Q |
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| T |
6986831 |
ttttgattcacagttttcgctgttccttctgatgttgtctacctgcctggttgttaaattgatgtttcttctaaatgggattttccaa |
6986918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 7045429 - 7045540
Alignment:
| Q |
12 |
gagaagaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7045429 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttgacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatggt |
7045528 |
T |
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| Q |
112 |
ttttgattcgca |
123 |
Q |
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|||| ||||||| |
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| T |
7045529 |
ttttcattcgca |
7045540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 7045552 - 7045588
Alignment:
| Q |
163 |
tgtttaattgatgtttcttctaaatgggattttccaa |
199 |
Q |
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| T |
7045552 |
tgttaaattgatgtttcttctaaatgggattttccaa |
7045588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 31898790 - 31898603
Alignment:
| Q |
12 |
gagaagaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31898790 |
gagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttataatatgga |
31898691 |
T |
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| Q |
112 |
ttttgattcgcagttttcgctgttccttcttatgttgtctacctgcctggttgtttaattgatgtttcttctaaatgggattttccaa |
199 |
Q |
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| T |
31898690 |
ttttgattcgcagttttcaccgttctttctgatttggtctgcctgctaggttatgaaattgatgtttcttctcaatgggcttttccaa |
31898603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 31962588 - 31962401
Alignment:
| Q |
12 |
gagaagaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
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|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31962588 |
gagatgaagaaattcaagagaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatattatgga |
31962489 |
T |
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| Q |
112 |
ttttgattcgcagttttcgctgttccttcttatgttgtctacctgcctggttgtttaattgatgtttcttctaaatgggattttccaa |
199 |
Q |
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|||||||||||||||||| | ||| |||| || | |||| ||||| |||| | |||||||||||||||| |||||| |||||||| |
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| T |
31962488 |
ttttgattcgcagttttcacctttctttctgatttggtctgcctgctaggttatgaaattgatgtttcttcttaatggggttttccaa |
31962401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 14262 - 14373
Alignment:
| Q |
12 |
gagaagaagaaattcaagaaaattttggtattgatgatgattttaacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatgga |
111 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14262 |
gagatgaagaaattcaagaaaattttggtattgatgatgattttgacactgatgataggcaagcatggatcaatgccacacggtatatttatacaatggt |
14361 |
T |
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| Q |
112 |
ttttgattcgca |
123 |
Q |
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| T |
14362 |
ttttcattcgca |
14373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 14385 - 14421
Alignment:
| Q |
163 |
tgtttaattgatgtttcttctaaatgggattttccaa |
199 |
Q |
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| T |
14385 |
tgttaaattgatgtttcttctaaatgggattttccaa |
14421 |
T |
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