View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1757_high_3 (Length: 551)
Name: NF1757_high_3
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 1 - 533
Target Start/End: Complemental strand, 47130505 - 47129970
Alignment:
| Q |
1 |
agggaaacatggaaaagtggcatgcttggagaggtggatgtcaagcatatcatcattgacaacagctacagacacagaattctcagttacatttgattgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47130505 |
agggaaacatggaaaagtggcatgcttggagaggtggatgtcaagcatatcatcattgacaacagctacagacacagaattctcagttacatttgattgg |
47130406 |
T |
|
| Q |
101 |
gaccatgagaagatgggagttcctggagctttcttaatcagaaataatcaccatagccaattttacctcaagacagttaccctagatgacattccaggac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47130405 |
gaccatgagaagatgggagttcctggagctttcttaatcagaaataatcaccatagccaattttacctcaagacagttaccctagatgacattccaggac |
47130306 |
T |
|
| Q |
201 |
atggtcctataacttttgtttgcaactcttgggtttaccctactcatcgttacacacatgatcgtgttttctttgcaaacaaggtaattttttaatttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47130305 |
atggtcctataacttttgtttgcaactcttgggtttaccctactcatcgttacacacatgatcgtgttttctttgcaaacaaggtaattttttaatttct |
47130206 |
T |
|
| Q |
301 |
gatggaataaaggtgtcaaattatt---tattgnnnnnnnactcatatattttcactttgctaaagtaaagcctgttgtgacaactaagcttggtttact |
397 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47130205 |
gatggaataaaggtgtcaaattattatttattgtttttttactcataaatcttcactttgctaaagtaaagcctgttgtgacaactaagcttggtttact |
47130106 |
T |
|
| Q |
398 |
tactctacttggactgtatagaaaaggtggtatatggctaataaagtaatagcagagaattacttacatagagtaaattaatagtaaataatacgaacaa |
497 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47130105 |
tactctacttggaatgtatagaaaaggtggtatatggctaataaagtaatagcagagaattacttacatagagtaaattaatagtaaataatacgaacaa |
47130006 |
T |
|
| Q |
498 |
aataaatataaatataggaggatgtctgtctgtgtc |
533 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
47130005 |
aataaatataaatataggaggatgtctgtctgtgtc |
47129970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University