View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757_high_7 (Length: 347)
Name: NF1757_high_7
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 12 - 328
Target Start/End: Original strand, 2529262 - 2529578
Alignment:
| Q |
12 |
catcatcacctttaacaagctcaacggaacttttcgagttacaaggagaaacaaaacccggttcacaactaggactggagctaagaacagaagggcaact |
111 |
Q |
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| T |
2529262 |
catcatcacctttaacaagctcaacggaacttttcgagttacaaggcgaaacaaaacccggttcacagctaggactggagctaagaacagaagggcaact |
2529361 |
T |
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| Q |
112 |
gcattttttgtcaccaatgcatatgttataaggtccacaaggttgtggtgtactacaagaatcttgaggtattcttgttgtcgatgaaccacttgagcct |
211 |
Q |
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| T |
2529362 |
gcattttttgtcaccaatgcatatgttataaggtccacaaggttgtggtgtactacaagaatcttgaggtattcttgttgtcgatgaaccacttgagcct |
2529461 |
T |
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| Q |
212 |
ttatttttaagattggtgaaagttatgaagccatcacttcctaaaactgctatccaagttgcatttgcagcatcagaaaaaataaattgccacaacaaag |
311 |
Q |
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| T |
2529462 |
ttatttttaagattggtgaaagttatgaagccatcacttcctaaaactgctatccaagttgcatttgcagcatcagaaaaaataaattgccacaacaatg |
2529561 |
T |
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| Q |
312 |
atttccttttgtcatag |
328 |
Q |
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| T |
2529562 |
atttccttttgtcatag |
2529578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 191
Target Start/End: Complemental strand, 31027961 - 31027917
Alignment:
| Q |
147 |
cacaaggttgtggtgtactacaagaatcttgaggtattcttgttg |
191 |
Q |
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| T |
31027961 |
cacaaggttctggtgtaccacaataatcttgtggtattcttgttg |
31027917 |
T |
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