View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1757_low_16 (Length: 248)

Name: NF1757_low_16
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1757_low_16
NF1757_low_16
[»] chr8 (12 HSPs)
chr8 (75-231)||(37682057-37682213)
chr8 (19-174)||(44878927-44879082)
chr8 (19-174)||(44880839-44880994)
chr8 (27-174)||(41841160-41841307)
chr8 (77-175)||(37679757-37679855)
chr8 (75-174)||(40054312-40054411)
chr8 (72-174)||(10944407-10944509)
chr8 (42-148)||(42220880-42220985)
chr8 (72-174)||(42555091-42555193)
chr8 (92-146)||(44582870-44582924)
chr8 (69-148)||(42092015-42092093)
chr8 (72-118)||(42872514-42872560)
[»] chr2 (24 HSPs)
chr2 (72-174)||(32918077-32918179)
chr2 (72-174)||(30732005-30732107)
chr2 (27-174)||(2841025-2841173)
chr2 (72-174)||(30733985-30734087)
chr2 (72-173)||(43850046-43850147)
chr2 (70-156)||(9008016-9008102)
chr2 (72-156)||(9026783-9026867)
chr2 (72-148)||(9032050-9032126)
chr2 (43-156)||(9023415-9023528)
chr2 (72-156)||(8973309-8973393)
chr2 (72-142)||(8979319-8979389)
chr2 (75-156)||(9020847-9020928)
chr2 (82-174)||(10763886-10763978)
chr2 (77-174)||(19232408-19232504)
chr2 (72-142)||(8984690-8984760)
chr2 (72-174)||(9030395-9030497)
chr2 (72-156)||(8992145-8992229)
chr2 (72-142)||(8988452-8988522)
chr2 (72-156)||(9016490-9016577)
chr2 (77-144)||(6471747-6471813)
chr2 (79-153)||(35701893-35701967)
chr2 (78-113)||(39814115-39814150)
chr2 (103-174)||(17225671-17225743)
chr2 (106-174)||(17275862-17275930)
[»] chr1 (21 HSPs)
chr1 (75-174)||(14652525-14652624)
chr1 (75-174)||(14662316-14662415)
chr1 (72-174)||(14654348-14654450)
chr1 (72-174)||(14664139-14664241)
chr1 (72-174)||(14669717-14669819)
chr1 (72-174)||(14683747-14683849)
chr1 (72-174)||(14706085-14706187)
chr1 (72-174)||(14708575-14708677)
chr1 (72-174)||(14674478-14674580)
chr1 (72-170)||(14676629-14676727)
chr1 (72-174)||(14679856-14679958)
chr1 (72-174)||(14681596-14681698)
chr1 (72-174)||(14716288-14716390)
chr1 (72-174)||(38175538-38175640)
chr1 (72-174)||(14667119-14667221)
chr1 (72-174)||(33988067-33988169)
chr1 (43-174)||(28366206-28366338)
chr1 (78-174)||(11872489-11872585)
chr1 (81-153)||(37422175-37422247)
chr1 (72-147)||(28698550-28698625)
chr1 (128-174)||(14703133-14703179)
[»] chr5 (8 HSPs)
chr5 (20-174)||(3643585-3643739)
chr5 (72-174)||(1716459-1716562)
chr5 (75-174)||(7524968-7525067)
chr5 (79-174)||(4103249-4103344)
chr5 (108-224)||(5350672-5350788)
chr5 (82-146)||(19261152-19261216)
chr5 (128-174)||(13636365-13636411)
chr5 (77-174)||(16037861-16037956)
[»] chr4 (13 HSPs)
chr4 (76-174)||(26984675-26984773)
chr4 (76-174)||(26998748-26998846)
chr4 (72-174)||(11652400-11652502)
chr4 (72-174)||(49106537-49106639)
chr4 (72-174)||(50077207-50077309)
chr4 (72-174)||(49108641-49108743)
chr4 (75-174)||(3461150-3461249)
chr4 (76-174)||(48205832-48205930)
chr4 (103-174)||(21503706-21503777)
chr4 (77-174)||(41013554-41013651)
chr4 (82-135)||(6431957-6432010)
chr4 (82-173)||(26982549-26982637)
chr4 (80-116)||(34481155-34481191)
[»] chr6 (7 HSPs)
chr6 (72-174)||(10795898-10796000)
chr6 (72-174)||(10791660-10791762)
chr6 (75-241)||(30521242-30521408)
chr6 (77-174)||(8875691-8875788)
chr6 (128-174)||(13136607-13136653)
chr6 (118-174)||(11333273-11333329)
chr6 (82-148)||(21216032-21216098)
[»] scaffold0549 (1 HSPs)
scaffold0549 (126-239)||(5447-5560)
[»] chr7 (2 HSPs)
chr7 (81-175)||(8128149-8128242)
chr7 (75-174)||(27134511-27134610)
[»] chr3 (1 HSPs)
chr3 (77-123)||(15758562-15758608)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 75 - 231
Target Start/End: Original strand, 37682057 - 37682213
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37682057 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T
Q  175 tgnnnnnnnagggtgagagtccaccaaaatagcttgctattaggtctctcaagtgtc 231  Q
    ||       ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37682157 tgtttttttaggatgagagtccaccaaaatagcttgctattaggtctctcaagtgtc 37682213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 174
Target Start/End: Original strand, 44878927 - 44879082
Alignment:
Q  19 agagagagagtgagtggacgagggatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatct 118  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44878927 agagagatagagagtggacgagggatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 44879026  T
Q  119 gttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||  ||||||  |||| |||||||||||    
T  44879027 gttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaatt 44879082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 44880994 - 44880839
Alignment:
Q  19 agagagagagtgagtggacgagggatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatct 118  Q
    ||||||| || ||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44880994 agagagatagagagtggacgagggatataaaagcagaggcgagcccaacattcaactcatacctttctcggccttttggctaagatcaagtgtagtatct 44880895  T
Q  119 gttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||  ||||||  |||| |||||||||||    
T  44880894 gttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaatt 44880839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 41841307 - 41841160
Alignment:
Q  27 agtgagtggacgagggatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttat 126  Q
    |||||||||| | | |||||||||||||| || | |||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41841307 agtgagtggatgtgagatataaaagcagaagccaacccatctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttat 41841208  T
Q  127 cagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||| |||||||  ||||||||||||||||    
T  41841207 cagtttaatatctgatatgtggtccaatgggtcacacgatattaaatt 41841160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 37679757 - 37679855
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaattt 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  37679757 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaattt 37679855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 40054312 - 40054411
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||||||||    
T  40054312 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaatt 40054411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 10944509 - 10944407
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||    
T  10944509 aactcatacctttctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaa 10944410  T
Q  172 att 174  Q
    |||    
T  10944409 att 10944407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 42220985 - 42220880
Alignment:
Q  42 gatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctga 141  Q
    |||||||||||||||||||||      || ||||||||| ||| |||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  42220985 gatataaaagcagaggcgagcatagctttcaactcatacatttttcggtcttttggctaagatcaagtgtagtatct-ttcttattagtttaatatctga 42220887  T
Q  142 tatgtgg 148  Q
    |||||||    
T  42220886 tatgtgg 42220880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 42555193 - 42555091
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||| |  |||||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||  |||||   |||||||||||||    
T  42555193 aactcatacctttcttgatcttttggctaagatcaagtgcagaatctgtttttatcagtttaatatttgatatgtggttcaatgaatcacacgatattaa 42555094  T
Q  172 att 174  Q
    |||    
T  42555093 att 42555091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 44582870 - 44582924
Alignment:
Q  92 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44582870 ttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 44582924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 148
Target Start/End: Original strand, 42092015 - 42092093
Alignment:
Q  69 ttaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 148  Q
    ||||||||||||||||||  |||||||| |||| || ||||||| ||| |||||||||||||||||||||||||||||||    
T  42092015 ttaaactcatacctttctttgccttttg-ctaaaattaagtgtaatatttgttcttatcagtttaatatctgatatgtgg 42092093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 42872560 - 42872514
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatct 118  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||    
T  42872560 aactcatacctttctcggccttttggctaagattaagtgtagtatct 42872514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 6e-49; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 32918077 - 32918179
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32918077 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaa 32918176  T
Q  172 att 174  Q
    |||    
T  32918177 att 32918179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 30732005 - 30732107
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||    
T  30732005 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaa 30732104  T
Q  172 att 174  Q
    |||    
T  30732105 att 30732107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 27 - 174
Target Start/End: Complemental strand, 2841173 - 2841025
Alignment:
Q  27 agtgagtggacgagggatataaaagcagaggcgagcccgagattaaa-ctcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 125  Q
    |||||||||| | | |||||||||||||| ||||||||    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2841173 agtgagtggatgtgagatataaaagcagacgcgagcccctttttaactctcatacctttctcggccttttggctaagatcaagtgtagtatctgttctta 2841074  T
Q  126 tcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||||  ||||||  ||||||||||||||||    
T  2841073 tcagtttaatatctgatatgtggttcaatggatcacacgatattaaatt 2841025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 30733985 - 30734087
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  30733985 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 30734084  T
Q  172 att 174  Q
    |||    
T  30734085 att 30734087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 43850046 - 43850147
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   |||| ||||||||    
T  43850046 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaa 43850145  T
Q  172 at 173  Q
    ||    
T  43850146 at 43850147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 9008016 - 9008102
Alignment:
Q  70 taaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  9008016 taaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgg 9008102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 9026783 - 9026867
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||||    
T  9026783 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgg 9026867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 9032050 - 9032126
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 148  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9032050 aactcatacctttctcggccttttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 9032126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 156
Target Start/End: Original strand, 9023415 - 9023528
Alignment:
Q  43 atataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 142  Q
    ||||||||||| | ||||| || |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9023415 atataaaagcataagcgagtccaactttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgat 9023514  T
Q  143 atgtgggccaatgg 156  Q
      |||| |||||||    
T  9023515 tagtggcccaatgg 9023528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 8973309 - 8973393
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||| |||||||    
T  8973309 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgg 8973393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 8979319 - 8979389
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8979319 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatttgat 8979389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 9020847 - 9020928
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 156  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||    
T  9020847 tcatacatttctcggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgg 9020928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 174
Target Start/End: Complemental strand, 10763978 - 10763886
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||| || ||||||||||    
T  10763978 tttctcggtcttttgactaagatcaagtgtagtatatgttcttatcagtttaatatctgatatgtggatcaatggtccatacaatattaaatt 10763886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 19232504 - 19232408
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||  ||| |||  ||||| ||||||||||    
T  19232504 atacctttctcggccttttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaatt 19232408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 8984690 - 8984760
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||    
T  8984690 aactcatacctttctcggccttttggctaagatcaagtgtagtatttgttcttattagtttaatatttgat 8984760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 9030395 - 9030497
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| | ||||  ||||||  |||||  ||||||    
T  9030395 aactcatatttttcttggccttttggctaagatcaagtgtagtatctgttcttatcaatttaatatttgagaagtggctcaatgggtcacacagtattaa 9030494  T
Q  172 att 174  Q
    |||    
T  9030495 att 9030497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 8992145 - 8992229
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatgg 156  Q
    ||||||| |||||||| | |||||||||||||||||||||||||| ||||||||| |||| ||||||||||  |||| |||||||    
T  8992145 aactcatgcctttctcagtcttttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgg 8992229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 8988452 - 8988522
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 142  Q
    |||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  8988452 aacttataccattcttggccttttggcgaagatcaagtgtagtatttgttcttatcagtttaatatttgat 8988522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 9016490 - 9016577
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatc---agtttaatatctgatatgtgggccaatgg 156  Q
    ||||||||||||  ||| |||||||||||||||||| |||||||||||||||||||   |||||||||||||||  |||| |||||||    
T  9016490 aactcataccttattcgaccttttggctaagatcaaatgtagtatctgttcttatcagtagtttaatatctgattagtggcccaatgg 9016577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 6471813 - 6471747
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatat 144  Q
    |||||||| ||| ||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||    
T  6471813 atacctttttcgaccttttggctaagat-aagtgtagtatatgttcttattagtttaatatctgatat 6471747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 153
Target Start/End: Original strand, 35701893 - 35701967
Alignment:
Q  79 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaa 153  Q
    |||||||||  | |||||||||||||||||||| |||| |||| |||| |||||||||| |||||||||||||||    
T  35701893 acctttctcaactttttggctaagatcaagtgtggtatttgtttttattagtttaatatttgatatgtgggccaa 35701967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 39814115 - 39814150
Alignment:
Q  78 tacctttctcggccttttggctaagatcaagtgtag 113  Q
    ||||||||||||||||||||||| ||||||||||||    
T  39814115 tacctttctcggccttttggctatgatcaagtgtag 39814150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 17225743 - 17225671
Alignment:
Q  103 atcaagtgtagtatctgttctt-atcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||| || ||| |||||||| ||||||| ||| ||||||   || |||||||||||||    
T  17225743 atcaagtgtagtatctgttttttatcggtttaataactgatatctggtccaatgaatcatacgatattaaatt 17225671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 17275862 - 17275930
Alignment:
Q  106 aagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||  ||||||||||||| ||| | | |||||||| |||||||  ||||||||||| ||||    
T  17275862 aagtgtagtatacgttcttatcagttcaatctttaatatgtggtccaatggatcacacgatattgaatt 17275930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 14652525 - 14652624
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14652525 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14652624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 14662316 - 14662415
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14662316 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 14662415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 14654450 - 14654348
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14654450 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14654351  T
Q  172 att 174  Q
    |||    
T  14654350 att 14654348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 14664241 - 14664139
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14664241 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14664142  T
Q  172 att 174  Q
    |||    
T  14664141 att 14664139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 14669819 - 14669717
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14669819 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14669720  T
Q  172 att 174  Q
    |||    
T  14669719 att 14669717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 14683747 - 14683849
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14683747 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14683846  T
Q  172 att 174  Q
    |||    
T  14683847 att 14683849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 14706085 - 14706187
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14706085 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14706184  T
Q  172 att 174  Q
    |||    
T  14706185 att 14706187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 14708575 - 14708677
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14708575 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14708674  T
Q  172 att 174  Q
    |||    
T  14708675 att 14708677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 14674478 - 14674580
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  14674478 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 14674577  T
Q  172 att 174  Q
    |||    
T  14674578 att 14674580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 170
Target Start/End: Original strand, 14676629 - 14676727
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatatta 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  14676629 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatta 14676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 14679856 - 14679958
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||    
T  14679856 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaa 14679955  T
Q  172 att 174  Q
    |||    
T  14679956 att 14679958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 14681596 - 14681698
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  14681596 aacttatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaa 14681695  T
Q  172 att 174  Q
    |||    
T  14681696 att 14681698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 14716288 - 14716390
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||    
T  14716288 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaa 14716387  T
Q  172 att 174  Q
    |||    
T  14716388 att 14716390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 38175640 - 38175538
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||||    
T  38175640 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaa 38175541  T
Q  172 att 174  Q
    |||    
T  38175540 att 38175538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 14667221 - 14667119
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||| ||||||||    
T  14667221 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaa 14667122  T
Q  172 att 174  Q
    |||    
T  14667121 att 14667119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 174
Target Start/End: Original strand, 33988067 - 33988169
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||||||||    
T  33988067 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaa 33988166  T
Q  172 att 174  Q
    |||    
T  33988167 att 33988169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 43 - 174
Target Start/End: Complemental strand, 28366338 - 28366206
Alignment:
Q  43 atataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 142  Q
    ||||||||||||| |||| |||    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28366338 atataaaagcagatgcgaacccctctttcaactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgat 28366239  T
Q  143 atgtg-ggccaatggtccacacgatattaaatt 174  Q
    |||||   |||||||  ||||||||||||||||    
T  28366238 atgtgaccccaatgggtcacacgatattaaatt 28366206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 174
Target Start/End: Complemental strand, 11872585 - 11872489
Alignment:
Q  78 tacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||  ||||||||||||||||    
T  11872585 tacctttctcggccttttgactaagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaatt 11872489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 81 - 153
Target Start/End: Original strand, 37422175 - 37422247
Alignment:
Q  81 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaa 153  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||    
T  37422175 ctttctcggccttttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaa 37422247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 28698550 - 28698625
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtg 147  Q
    ||||||||| |||||||| ||||||||||||||||| |||||||| | || |||||| |||||||| |||||||||    
T  28698550 aactcatacatttctcggtcttttggctaagatcaaatgtagtatatatttttatcaatttaatatttgatatgtg 28698625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 14703133 - 14703179
Alignment:
Q  128 agtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||| |||||||||| ||||| |||||||||||||||||||    
T  14703133 agtttaatatttgatatgtggaccaatagtccacacgatattaaatt 14703179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 174
Target Start/End: Original strand, 3643585 - 3643739
Alignment:
Q  20 gagagagagtgagtggacgagggatataaaagcagaggcgagcccgagattaaactcatacctttctcggccttttggctaagatcaagtgtagtatctg 119  Q
    |||||| |||||||||| | ||||||||||| |||| ||||| |  |  ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3643585 gagagaaagtgagtggatgtgggatataaaaacagaagcgagacttactttaaattcatacctttctcggccttttggctaagatcaagtgtagtatctg 3643684  T
Q  120 ttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||| ||| |||  ||||||||||||||||    
T  3643685 ttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaatt 3643739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 1716562 - 1716459
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggcc-aatggtccacacgatatta 170  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||  ||||||||||||    
T  1716562 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatatta 1716463  T
Q  171 aatt 174  Q
    ||||    
T  1716462 aatt 1716459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 7524968 - 7525067
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  ||||||||||||||||    
T  7524968 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaatt 7525067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 4103249 - 4103344
Alignment:
Q  79 acctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  4103249 acctttctcagcattttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaatt 4103344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 224
Target Start/End: Original strand, 5350672 - 5350788
Alignment:
Q  108 gtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatttgnnnnnnnagggtgagagtccaccaaaatagc 207  Q
    ||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||        ||||  ||||||||||||| ||||    
T  5350672 gtgtagtatctattgttatcagtttaatatctgatatgtgggacaatggtccacacgatattaaatttatttcttgaggggtagagtccaccaaagtagc 5350771  T
Q  208 ttgctattaggtctctc 224  Q
    |||||||| | ||||||    
T  5350772 ttgctattggatctctc 5350788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 146
Target Start/End: Complemental strand, 19261216 - 19261152
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgt 146  Q
    |||||| ||||||||  |||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  19261216 tttctcagccttttgattaagatcaagtgtaatatatgttcttatccgttaaatatctgatatgt 19261152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 13636365 - 13636411
Alignment:
Q  128 agtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||  ||| |||||||||| |||||||||    
T  13636365 agtttaatatctgatatgtggatcaacggtccacacggtattaaatt 13636411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 16037861 - 16037956
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||| |||||||||| |||  ||||||||||||||||||| ||||||||| |  ||||||| ||||| |||| | |||||  || |||||||||||||    
T  16037861 atacttttctcggccgtttt-ctaagatcaagtgtagtatttgttcttattatcttaatatttgata-gtggtctaatgggtcaaacgatattaaatt 16037956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 1e-46; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 26984773 - 26984675
Alignment:
Q  76 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26984773 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 26984675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 26998846 - 26998748
Alignment:
Q  76 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26998846 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaatt 26998748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 11652502 - 11652400
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  11652502 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaa 11652403  T
Q  172 att 174  Q
    |||    
T  11652402 att 11652400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 49106639 - 49106537
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||    
T  49106639 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaa 49106540  T
Q  172 att 174  Q
    |||    
T  49106539 att 49106537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 50077309 - 50077207
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |||| ||||||||    
T  50077309 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaa 50077210  T
Q  172 att 174  Q
    |||    
T  50077209 att 50077207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 49108743 - 49108641
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||  |||||||||||||    
T  49108743 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaa 49108644  T
Q  172 att 174  Q
    |||    
T  49108643 att 49108641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 3461249 - 3461150
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||  ||||||||||||||||    
T  3461249 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaatt 3461150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 76 - 174
Target Start/End: Original strand, 48205832 - 48205930
Alignment:
Q  76 catacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||| | |||||||||| |||||||| ||| ||||  ||| |||||||||||    
T  48205832 catacctttctcggccttttagctaagattaagtgtagtatctgttcttattaatttaatatcttatatgtggaccattggtttacatgatattaaatt 48205930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 21503706 - 21503777
Alignment:
Q  103 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||| |  ||||||||||||||||    
T  21503706 atcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaatt 21503777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 174
Target Start/End: Complemental strand, 41013651 - 41013554
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||| |||||||||||||||| |||||| |||| || ||| |||||||||| |||||||||||||||||||| |||| ||| |||| | |||||||||    
T  41013651 atacttttctcggccttttggttaagattaagtataatatatgttcttatccgtttaatatctgatatgtggaccaagggttcacatggtattaaatt 41013554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 135
Target Start/End: Complemental strand, 6432010 - 6431957
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaat 135  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||||    
T  6432010 tttctcggcctattggctaagatcaggtttagtatctcttcttattagtttaat 6431957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 26982549 - 26982637
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaat 173  Q
    ||||||||||| |||||||||||||||||||| |||||   |||| |||||| ||||| ||||||||  ||||| |  ||| ||||||||||    
T  26982549 tttctcggcctcttggctaagatcaagtgtagcatctg---ttattagtttagtatctaatatgtggatcaatgatttacatgatattaaat 26982637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 34481191 - 34481155
Alignment:
Q  80 cctttctcggccttttggctaagatcaagtgtagtat 116  Q
    |||||||| ||||||||||||||||| ||||||||||    
T  34481191 cctttctcagccttttggctaagatcgagtgtagtat 34481155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 8e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 10796000 - 10795898
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  |||||||||||||    
T  10796000 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaa 10795901  T
Q  172 att 174  Q
    |||    
T  10795900 att 10795898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 174
Target Start/End: Complemental strand, 10791762 - 10791660
Alignment:
Q  72 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaa 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||  |||| ||||||||    
T  10791762 aactcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaa 10791663  T
Q  172 att 174  Q
    |||    
T  10791662 att 10791660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 75 - 241
Target Start/End: Original strand, 30521242 - 30521408
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||  |   ||||||||||| ||||    
T  30521242 tcatacctttctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatt 30521341  T
Q  175 tgnnnnnnnagggtgagagtccaccaaaatagcttgctattaggtctctcaagtgtcgcctttgctt 241  Q
    |        |||| |||||||||| |  ||||||||||||| |||||||||||||||| ||||||||    
T  30521342 tattttttgagggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctt 30521408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 77 - 174
Target Start/End: Original strand, 8875691 - 8875788
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |   |||||||||||||||    
T  8875691 atacatttcccggccttttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaatt 8875788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 13136607 - 13136653
Alignment:
Q  128 agtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||    
T  13136607 agtttaatatctgatatgtggaccaatggtccacacgatattaaatt 13136653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 11333273 - 11333329
Alignment:
Q  118 tgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    ||||||||||||||||||||||||||||||| |||| ||  ||||||||||||||||    
T  11333273 tgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaatt 11333329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 21216032 - 21216098
Alignment:
Q  82 tttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgg 148  Q
    ||||| || |||||| ||||||||| || ||| |||| |||||||||||||||||||| ||||||||    
T  21216032 tttcttggtcttttgactaagatcatgtatagcatctattcttatcagtttaatatcttatatgtgg 21216098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 126 - 239
Target Start/End: Original strand, 5447 - 5560
Alignment:
Q  126 tcagtttaatatctgatatgtgggccaatggtccacacgatattaaatttgnnnnnnnagggtgagagtccaccaaaatagcttgctattaggtctctca 225  Q
    ||||||||||||||||||| ||||||||| || |||||||||||||||||        |||  |||||||||||| |||||||||||||| |||||||||    
T  5447 tcagtttaatatctgatatatgggccaattgttcacacgatattaaatttattttttgaggtggagagtccaccacaatagcttgctattgggtctctca 5546  T
Q  226 agtgtcgcctttgc 239  Q
    ||||||||||||||    
T  5547 agtgtcgcctttgc 5560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 8128149 - 8128242
Alignment:
Q  81 ctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaattt 175  Q
    ||||||||  ||||||| |||||| ||||||||||| ||||||| | |||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  8128149 ctttctcgttcttttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatggt-cacacaatattaaattt 8128242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 75 - 174
Target Start/End: Original strand, 27134511 - 27134610
Alignment:
Q  75 tcatacctttctcggccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 174  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||||||||  |||||||||||||||||||| | ||||   || |||||||||||||    
T  27134511 tcatacctttttcggccttttcactaagatcaaatctagtatctgttcttattggtttaatatctgatatgtggtctaatgagtcaaacgatattaaatt 27134610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 15758608 - 15758562
Alignment:
Q  77 atacctttctcggccttttggctaagatcaagtgtagtatctgttct 123  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  15758608 atacctttctcagccttttggctaagatcaagtgtaatatctgttct 15758562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University