View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757_low_5 (Length: 397)
Name: NF1757_low_5
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 8768511 - 8768907
Alignment:
| Q |
1 |
ttttgttgaagcattttgcaaatgctacacttcgaagcttcaacaaaatcacggcacaaccgtgattcaaaacatgcacaagtctttcctcggagaggcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
8768511 |
ttttgttgaagcattttgcaaatgctacacttcgaagcttcaacaaaatcacggcaccaccgtgattgaaaacatgcacaagtcttttctcggagaggcc |
8768610 |
T |
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| Q |
101 |
ttgacatgctatcctattcactgggctttccccctaagtttcttgatttagtgtgagattagcttattgcattcagtcttatttctcaagtcatatgctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8768611 |
ttgacatgctatcctattcactgggctttccccccaagtttcttgatttagcgtgagattagcttattgcattcagtcttatttctcaagtcatatgctt |
8768710 |
T |
|
| Q |
201 |
tgttaaccaggtacttgcacgaagtttgcttgccctctgttgtacatagaaatttcaaatcagcaaatatattactcgacgaggagctcaatcctcacct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8768711 |
tgttaaccaggtacttgcacgaagtttgcttgccctctgttgtacatagaaatttcaaatcagcaaatatattactcgacgaggagctcaatcctcacct |
8768810 |
T |
|
| Q |
301 |
gtctgactgtggcttagctgctctgacaccaaacactgagagacaggttggtgatagatgcttcattttcctttgtgcatcgctgcacatggtctta |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8768811 |
gtctgactgtggcttagctgctctgacaccaaacactgagagacaggttggtgatagatgcttcattttcctttgtgcatcgctgcacatggtctta |
8768907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 14816392 - 14816446
Alignment:
| Q |
13 |
attttgcaaatgctacacttcgaagcttcaacaaaatcacggcacaaccgtgatt |
67 |
Q |
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| T |
14816392 |
attttccaaaagctacacttcggagcttcaacaaaatcacggttccaccgtgatt |
14816446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 34404203 - 34404162
Alignment:
| Q |
13 |
attttgcaaatgctacacttcgaagcttcaacaaaatcacgg |
54 |
Q |
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|||||||||| ||||||||||| ||||||||||||| ||||| |
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| T |
34404203 |
attttgcaaaagctacacttcgtagcttcaacaaaagcacgg |
34404162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 22345785 - 22345813
Alignment:
| Q |
26 |
tacacttcgaagcttcaacaaaatcacgg |
54 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
22345785 |
tacacttcgaagcttcaacaaaatcacgg |
22345813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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