View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1757_low_6 (Length: 388)

Name: NF1757_low_6
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1757_low_6
NF1757_low_6
[»] chr3 (2 HSPs)
chr3 (17-376)||(26270081-26270440)
chr3 (253-356)||(3440373-3440476)
[»] chr6 (2 HSPs)
chr6 (244-373)||(15107125-15107254)
chr6 (301-356)||(24954707-24954762)
[»] chr1 (3 HSPs)
chr1 (290-356)||(10448652-10448718)
chr1 (301-347)||(25268676-25268722)
chr1 (181-214)||(1073240-1073273)
[»] chr2 (4 HSPs)
chr2 (253-356)||(11169586-11169689)
chr2 (175-218)||(43657810-43657853)
chr2 (181-214)||(20681554-20681587)
chr2 (178-214)||(9547753-9547789)
[»] scaffold0002 (1 HSPs)
scaffold0002 (175-207)||(460369-460401)


Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 26270440 - 26270081
Alignment:
Q  17 gaaatgaaatgttactgcgaacagactaacttcccagcataagatgtgtcagagaagagagccgaataattacaacaagagttcaaaaaaccataaacca 116  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  26270440 gaaatgaaatgttactacgaacagactaacttcccagcataagatgtgtcagaaaagagagccgaataattacaacaagagttcaaaaaaccataaacca 26270341  T
Q  117 attaccaatactcaaacaaagaaaagggctttgggagcaaatgtaaaacttatacaggaaaactacaaaattagctttaaaccaccaaaagaaaagaaac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||  ||||||||    
T  26270340 attaccaatactcaaacaaagaaaagggctttgggagcaaatgtaaaacttataccggaaaactacaaaattagttttaaaccaccaaaaagaaagaaac 26270241  T
Q  217 ttaatctaggaaagaaactagaaaattagcttaagcttctccaaaagttgaataagagcgttttctttaccatggaaaattctgtcatttcattcctttc 316  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  26270240 ttaatctaggaaataaactagaaaattagcttaatcttctccaaaagttgaataagagcgttttctttaccatggaaaattatgtcatttctttcctttc 26270141  T
Q  317 agatcatccaagaagtagcaaaccaaatcaataacatgaacaagcgctttgatttagtat 376  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  26270140 agatcacccaagaagtcgcaaaccaaatcaataacatgaacaagcgctttgatttagtat 26270081  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 253 - 356
Target Start/End: Complemental strand, 3440476 - 3440373
Alignment:
Q  253 ttctccaaaagttgaataagagcgttttctttaccatggaaaattctgtcatttcattcctttcagatcatccaagaagtagcaaaccaaatcaataaca 352  Q
    ||||||||||| |||| ||||| | ||| ||| ||| | |||||  ||||||||| ||||||||| |||| ||||||| | |||||||| ||||||||||    
T  3440476 ttctccaaaagctgaagaagagtgctttttttgccacgaaaaatcttgtcatttctttcctttcaaatcacccaagaactcgcaaaccagatcaataaca 3440377  T
Q  353 tgaa 356  Q
    ||||    
T  3440376 tgaa 3440373  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 244 - 373
Target Start/End: Complemental strand, 15107254 - 15107125
Alignment:
Q  244 agcttaagcttctccaaaagttgaataagagcgttttctttaccatggaaaattctgtcatttcattcctttcagatcatccaagaagtagcaaaccaaa 343  Q
    |||||||  ||||||||||  | |||| |||  |||||||| ||| | ||||| || ||||||| |||||| || |||||||||||| | ||||||||||    
T  15107254 agcttaatattctccaaaaacttaataggagaattttctttgccacgaaaaatcctatcatttctttccttccaaatcatccaagaactcgcaaaccaaa 15107155  T
Q  344 tcaataacatgaacaagcgctttgatttag 373  Q
    |||||||||||||  ||| | |||||||||    
T  15107154 tcaataacatgaaagagcaccttgatttag 15107125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 24954707 - 24954762
Alignment:
Q  301 tcatttcattcctttcagatcatccaagaagtagcaaaccaaatcaataacatgaa 356  Q
    ||||||| |||||| || |||| |||||||||||||||||||||||||||||||||    
T  24954707 tcatttctttccttccaaatcacccaagaagtagcaaaccaaatcaataacatgaa 24954762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 10448718 - 10448652
Alignment:
Q  290 ggaaaattctgtcatttcattcctttcagatcatccaagaagtagcaaaccaaatcaataacatgaa 356  Q
    |||||||||||| ||||| |||||| ||||  | ||||||||| |||||||||||||| ||||||||    
T  10448718 ggaaaattctgttatttctttccttccagagaacccaagaagtcgcaaaccaaatcaagaacatgaa 10448652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 301 - 347
Target Start/End: Complemental strand, 25268722 - 25268676
Alignment:
Q  301 tcatttcattcctttcagatcatccaagaagtagcaaaccaaatcaa 347  Q
    ||||||| ||||||  ||||||||||||||||| |||||||||||||    
T  25268722 tcatttctttccttctagatcatccaagaagtaacaaaccaaatcaa 25268676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 1073240 - 1073273
Alignment:
Q  181 acaaaattagctttaaaccaccaaaagaaaagaa 214  Q
    ||||||| ||||||||||||||||||||||||||    
T  1073240 acaaaatgagctttaaaccaccaaaagaaaagaa 1073273  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 356
Target Start/End: Original strand, 11169586 - 11169689
Alignment:
Q  253 ttctccaaaagttgaataagagcgttttctttaccatggaaaattctgtcatttcattcctttcagatcatccaagaagtagcaaaccaaatcaataaca 352  Q
    |||||||||||||||  | ||  ||||| ||||||| |  ||||  ||||||||  ||||||||| |||| ||||||| ||||||| ||| |||||||||    
T  11169586 ttctccaaaagttgaggatgaaagttttgtttaccacgagaaatcatgtcatttttttcctttcaaatcacccaagaactagcaaatcaactcaataaca 11169685  T
Q  353 tgaa 356  Q
    ||||    
T  11169686 tgaa 11169689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 43657853 - 43657810
Alignment:
Q  175 aaaactacaaaattagctttaaaccaccaaaagaaaagaaactt 218  Q
    ||||| ||||| ||| ||||||||||||||||||||||||||||    
T  43657853 aaaacaacaaatttaactttaaaccaccaaaagaaaagaaactt 43657810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Original strand, 20681554 - 20681587
Alignment:
Q  181 acaaaattagctttaaaccaccaaaagaaaagaa 214  Q
    ||||||| ||||||||||||||||||||||||||    
T  20681554 acaaaatgagctttaaaccaccaaaagaaaagaa 20681587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 9547753 - 9547789
Alignment:
Q  178 actacaaaattagctttaaaccaccaaaagaaaagaa 214  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  9547753 actacaaacttagccttaaaccaccaaaagaaaagaa 9547789  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 460369 - 460401
Alignment:
Q  175 aaaactacaaaattagctttaaaccaccaaaag 207  Q
    ||||| |||||||||||||||||||||||||||    
T  460369 aaaacaacaaaattagctttaaaccaccaaaag 460401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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