View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1757_low_8 (Length: 345)
Name: NF1757_low_8
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 10101456 - 10101783
Alignment:
| Q |
1 |
tgtgtttgaatcaacgatgaattaggcaaaatcacggcaagccattgtgatcttggcaaaagctacactttgtagcataacaacatcatggtgccatcgt |
100 |
Q |
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| T |
10101456 |
tgtgtttgaatcaacgatgaattaggcaaaatcacggcaagccattgtgatcttggcaaaagctacactttgtagcataacaacatcacggtgccatcgt |
10101555 |
T |
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| Q |
101 |
tatttcgtcaaattcactgtattcatgttattgtatgaaggttttcattaaaagttgcatgctttttaaagtattacttttccccttagcatgaattgtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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| T |
10101556 |
tatttcgtcaaattcactgtattcatgttattgtatgaaggttttcattaaaagttgcatgctttttaaagtattgcttttccccttagaatgaattgtt |
10101655 |
T |
|
| Q |
201 |
tgcctcgtttttaaattctatcagttgtctccttccacttgaaactgttgctttttatactcttaagtgaaaactgatgattggataaactgtttaaagt |
300 |
Q |
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| T |
10101656 |
cgcctcgttttcaaattctatcagttgtctccttccacttgaaactgttgctttttatactcttaagtgaaaactgatgattggataaactgtttaaaat |
10101755 |
T |
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| Q |
301 |
cttgagatgtttggcagtggctcatttt |
328 |
Q |
| |
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| T |
10101756 |
cttgagatgtttggcagtggctcatttt |
10101783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 10214140 - 10213950
Alignment:
| Q |
1 |
tgtgtttgaatcaacgatgaattaggcaaaatcacggcaagccattgtgatcttggcaaaagctacactttgtagcat-aacaacatcatggtgccatcg |
99 |
Q |
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|||||||||||| |||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||| | |
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| T |
10214140 |
tgtgtttgaatcgacgatgaactaggcaaaatcaccgcaagccattgtgattttggcaaaagctacactttgtagcatcaacaacatcacggtgccacag |
10214041 |
T |
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| Q |
100 |
ttatttcgtcaaattcactgt-attcatgttattgtatgaaggttttcattaaaagttgcatgctttttaaagtattacttttccccttag |
189 |
Q |
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|||||| ||| |||||||||| |||| ||||| |||||||||||||||||||||||| ||||||||| ||| |||| |||||| |||||| |
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| T |
10214040 |
ttattttgtcgaattcactgtggttcaagttatcgtatgaaggttttcattaaaagttacatgcttttcaaaatattgcttttcaccttag |
10213950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 176
Target Start/End: Original strand, 10101995 - 10102144
Alignment:
| Q |
29 |
aaatcacggcaagccattgtgatcttggcaaaagctacactttgtagcat-aacaacatcatggtgccatcgttatttcgtcaaattcactgt-attcat |
126 |
Q |
| |
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|||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||| || ||| |||||||||| ||||||||| || ||| | |
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| T |
10101995 |
aaatcacggcgagccattgtgattttggcaaaagctacacttcgtagcatcaacaacatcacagttccaccgttatttcgacaaattcaccgtgatttaa |
10102094 |
T |
|
| Q |
127 |
gttattgtatgaaggttttcattaaaagttgcatgctttttaaagtatta |
176 |
Q |
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||||| |||||||| ||||||||||||||| ||||||||| ||| ||||| |
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| T |
10102095 |
gttatcgtatgaagtttttcattaaaagttacatgcttttaaaaatatta |
10102144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 189
Target Start/End: Complemental strand, 9661790 - 9661646
Alignment:
| Q |
47 |
gtgatcttggcaaaagctacactttgtagcat-aacaacatcatggtgccatcgttatttcgtcaaattcactgt-attcatgttattgtatgaaggttt |
144 |
Q |
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||||| ||||||||| | ||||||| ||| || |||||||||| ||||||| | || ||||||||||||||| || ||||| ||||| |||||||||||| |
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| T |
9661790 |
gtgattttggcaaaaaccacactttatagaatcaacaacatcacggtgccacctttgtttcgtcaaattcaccgtgattcaagttatcgtatgaaggttt |
9661691 |
T |
|
| Q |
145 |
tcattaaaagttgcatgctttttaaagtattacttttccccttag |
189 |
Q |
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||| |||||||||||||||||||||| ||||||||||| |||||| |
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| T |
9661690 |
tcaataaaagttgcatgctttttaaaatattacttttcaccttag |
9661646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 207 - 324
Target Start/End: Original strand, 10108108 - 10108224
Alignment:
| Q |
207 |
gtttttaaattctatcagttgtctccttccacttgaaactgttgctttttatactcttaagtgaaaactgatgattggataaactgtttaaagtcttgag |
306 |
Q |
| |
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||||||||||||||| |||||||||||||| | | || |||||||||||||||| || |||||||| |||||||||||||| | ||||| || ||||||| |
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| T |
10108108 |
gtttttaaattctattagttgtctccttcctcctaaagctgttgctttttataccct-aagtgaaatctgatgattggatacaatgtttgaaatcttgag |
10108206 |
T |
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| Q |
307 |
atgtttggcagtggctca |
324 |
Q |
| |
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|||||||||||||||||| |
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| T |
10108207 |
atgtttggcagtggctca |
10108224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 243 - 324
Target Start/End: Original strand, 13855158 - 13855239
Alignment:
| Q |
243 |
aactgttgctttttatactcttaagtgaaaactgatgattggataaactgtttaaagtcttgagatgtttggcagtggctca |
324 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||||||||| | || |||||||||||||||||||||||||||| |
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| T |
13855158 |
aactgttgctttttatactcttaactgaaatctgatgattggataaaatattcgaagtcttgagatgtttggcagtggctca |
13855239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 12110297 - 12110134
Alignment:
| Q |
14 |
acgatgaattaggcaaaatcacggcaagccattgtgatcttggcaaaagctacactttgtagcat-aacaacatcatggtgccatcgttatttcgtcaaa |
112 |
Q |
| |
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|||| ||| ||||||||||| ||| ||||| ||||| ||| ||||| || |||||||||| || |||||||||| |||||| | || |||||| ||| |
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| T |
12110297 |
acgacgaactaggcaaaatc-cggggagccaaggtgattttgacaaaaacttcactttgtagaatcaacaacatcacagtgccacctttgtttcgttaaa |
12110199 |
T |
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| Q |
113 |
ttcactgt-attcatgttattgtatgaaggttttcattaaaagttgcatgctttttaaagtatta |
176 |
Q |
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||||| || ||||| |||| |||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
12110198 |
ttcaccgtgattcaagttactgtatgaaggttttcaataaaagttgcatgctttttaaaatatta |
12110134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 9659893 - 9659844
Alignment:
| Q |
122 |
ttcatgttattgtatgaaggttttcattaaaagttgcatgctttttaaag |
171 |
Q |
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|||| ||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
9659893 |
ttcaagttatcgtatgaagattttcattaaaagttgcatgctttttaaag |
9659844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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