View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1757_low_9 (Length: 326)
Name: NF1757_low_9
Description: NF1757
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1757_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 42363368 - 42363077
Alignment:
| Q |
19 |
gattgagttttaactttaacactcatccctaataagaaatttttacaatgaggagtacaatcttttacattatgtatagcattgataacaaacttaaaca |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42363368 |
gattgagttttaactttaacacttatccctaataagaaatttttacaatgaggagtacaatcttttacattatgtatagcattgataacaaacttaaaca |
42363269 |
T |
|
| Q |
119 |
aatgaagcactattaaggatattagtataaacctctcagcttagtttctcacttatgattccttcaagtgatccaacaagactcacaactgtcaccagaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42363268 |
aatgaagcactattaaggatattagtataaacctctcagcttagtttctcacttatgattccttcaagtgatccaacaagactcacaactgtcaccagaa |
42363169 |
T |
|
| Q |
219 |
ggcaaacaaagctaaaagtcctaagaacaatccattttgtagaccaagcttcaattttattctgtacaaaatacatctctaccgggaaatat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42363168 |
ggcaaacaaagctaaaagtcctaagaacaatccattttgtagaccaagcttcaattttattctgtacaaaatacatctctaccgggaaatat |
42363077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 24415500 - 24415353
Alignment:
| Q |
163 |
tttctcacttatgattccttcaagtgatccaacaagactcacaactgtcaccagaaggcaaacaaagctaaaagtcctaagaacaatccattttgtagac |
262 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| | || | || || || | |||| ||||||||||| |||| ||||||||||||||| ||| | |
|
|
| T |
24415500 |
tttctcacttatgattccttcaaatgatccaacaaatccaaccatggtgacaaggaagcaagcaaagctaaaaatccttagaacaatccattttctagtc |
24415401 |
T |
|
| Q |
263 |
caagcttcaattttattctgtacaaaatacatctctaccgggaaatat |
310 |
Q |
| |
|
|||||| ||| ||| ||||||||||| ||||| || || ||||||||| |
|
|
| T |
24415400 |
caagctccaactttcttctgtacaaagtacatttcaactgggaaatat |
24415353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 310
Target Start/End: Complemental strand, 24402684 - 24402537
Alignment:
| Q |
163 |
tttctcacttatgattccttcaagtgatccaacaagactcacaactgtcaccagaaggcaaacaaagctaaaagtcctaagaacaatccattttgtagac |
262 |
Q |
| |
|
|||||||| || ||||||||||| ||| ||||||| | || | ||| || |||| |||| ||||||||||| |||| |||||||||||| | ||| | |
|
|
| T |
24402684 |
tttctcacgtacgattccttcaaatgacccaacaaatccaactattgtgacaagaaagcaagcaaagctaaaaatccttagaacaatccatctcctagtc |
24402585 |
T |
|
| Q |
263 |
caagcttcaattttattctgtacaaaatacatctctaccgggaaatat |
310 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
24402584 |
caagctccaattttattctgtacaaagtacatttcaactgggaaatat |
24402537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 310
Target Start/End: Original strand, 24419025 - 24419172
Alignment:
| Q |
163 |
tttctcacttatgattccttcaagtgatccaacaagactcacaactgtcaccagaaggcaaacaaagctaaaagtcctaagaacaatccattttgtagac |
262 |
Q |
| |
|
|||||| |||||||| ||||||| ||||||||||| | || | ||| || |||| |||| ||||||||||| |||| ||| ||||||||||| ||| | |
|
|
| T |
24419025 |
tttctctcttatgataccttcaaatgatccaacaaatccaaccattgtgacaagaaagcaagcaaagctaaaaatccttagagcaatccattttctagtc |
24419124 |
T |
|
| Q |
263 |
caagcttcaattttattctgtacaaaatacatctctaccgggaaatat |
310 |
Q |
| |
|
|||||| ||| ||| ||||||||||| ||||| || || ||||||||| |
|
|
| T |
24419125 |
caagctccaactttcttctgtacaaagtacatttcaactgggaaatat |
24419172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 310
Target Start/End: Complemental strand, 24380468 - 24380319
Alignment:
| Q |
161 |
agtttctcacttatgattccttcaagtgatccaacaagactcacaactgtcaccagaaggcaaacaaagctaaaagtcctaagaacaatccattttgtag |
260 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| | | || | ||| || |||| |||| |||||||||| |||| ||||||||||||||| ||| |
|
|
| T |
24380468 |
agtttctcatgtatgattccttcaaatgatccaattaatcccatcattgtaacaagaaagcaagcaaagctaaatatcctgagaacaatccattttttag |
24380369 |
T |
|
| Q |
261 |
accaagcttcaattttattctgtacaaaatacatctctaccgggaaatat |
310 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||| || || ||||||||| |
|
|
| T |
24380368 |
tccaagctccaattttcttctgtacaaagtacatttcaactgggaaatat |
24380319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University