View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17580_high_10 (Length: 368)

Name: NF17580_high_10
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17580_high_10
NF17580_high_10
[»] chr3 (4 HSPs)
chr3 (1-350)||(50271803-50272164)
chr3 (308-350)||(166862-166904)
chr3 (308-350)||(50676846-50676888)
chr3 (308-352)||(54457225-54457269)
[»] chr7 (4 HSPs)
chr7 (306-350)||(46243365-46243409)
chr7 (308-350)||(23602348-23602390)
chr7 (308-352)||(32376511-32376555)
chr7 (306-350)||(37665818-37665862)
[»] chr6 (3 HSPs)
chr6 (308-350)||(5641669-5641711)
chr6 (308-350)||(7164768-7164810)
chr6 (305-350)||(32344713-32344758)
[»] chr5 (2 HSPs)
chr5 (308-350)||(15680880-15680922)
chr5 (308-352)||(12256475-12256519)
[»] chr4 (1 HSPs)
chr4 (308-350)||(35733448-35733490)
[»] chr2 (2 HSPs)
chr2 (308-350)||(37886204-37886246)
chr2 (308-352)||(43027227-43027271)
[»] chr1 (2 HSPs)
chr1 (308-350)||(2350354-2350396)
chr1 (306-347)||(17916780-17916821)
[»] chr8 (1 HSPs)
chr8 (308-352)||(39172192-39172236)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 50272164 - 50271803
Alignment:
Q  1 aagaaagggtgatgcagcggttgtttagagccatagggtgctttatatatactcccaatgttacatgtatgcaatg-----tatattcattcatgtcatg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||    
T  50272164 aagaaagggtgatgcagcggttgtttagagccatagggtgctttatatatactcccaatgttacatgtatgcaatgcaatgtatattcattcatgtcatg 50272065  T
Q  96 tatgataataaataaagttgtactaataataaccggtccaggtaatgtaccaaattttgtaggtgagaatcgatgatgtgtatggtttatgcgtttttgt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50272064 tatgataataaataaagttgtactaataataaccggtccaggtaatgtaccaaattttgtaggtgagaatcgatgatgtgtatggtttatgcgtttttgt 50271965  T
Q  196 tttgaaggtggtggggttccacatagac------agaagaagcaacacnnnnnnnagggttaatagtcattttcatcttgaatatataagcagtagttat 289  Q
    ||||||||||||||||||||||||||||      ||||||||||||||       ||||||||||||||||||||||  ||||||||||||| |||||||    
T  50271964 tttgaaggtggtggggttccacatagacagaaacagaagaagcaacacttttttgagggttaatagtcattttcatccggaatatataagcattagttat 50271865  T
Q  290 gata-ggnnnnnnnnagttaagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    ||||           ||| ||||||||||||||||| |||||||||| ||||||||||||||    
T  50271864 gatattttttttttcagtcaagtagtctagcggttagagaaattcaccttaaaggtgaataa 50271803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 166904 - 166862
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||    
T  166904 aagtagcctagcggctaaagaaattcactttaaaggtgaataa 166862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 50676846 - 50676888
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    ||||||||||| ||||| |||||||||| ||||||||||||||    
T  50676846 aagtagtctagtggttagagaaattcaccttaaaggtgaataa 50676888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 54457269 - 54457225
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataaat 352  Q
    |||||| ||||||| || |||||||||| ||||||||||||||||    
T  54457269 aagtagcctagcggctagagaaattcaccttaaaggtgaataaat 54457225  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 46243409 - 46243365
Alignment:
Q  306 ttaagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    ||||||| ||||||||||| |||||||||| ||||||||||||||    
T  46243409 ttaagtattctagcggttagagaaattcaccttaaaggtgaataa 46243365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 23602390 - 23602348
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    ||||||||||| || ||||||||||||| ||||||||||||||    
T  23602390 aagtagtctagtggctaaagaaattcaccttaaaggtgaataa 23602348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 32376555 - 32376511
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataaat 352  Q
    ||||||| |||||| ||||||||||||| |||||| |||||||||    
T  32376555 aagtagtttagcggctaaagaaattcaccttaaagttgaataaat 32376511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 37665862 - 37665818
Alignment:
Q  306 ttaagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    ||||||||||||| || ||||||||||||| ||||||| ||||||    
T  37665862 ttaagtagtctagtggctaaagaaattcaccttaaaggcgaataa 37665818  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 5641669 - 5641711
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    |||||||||||||| || |||||||||| ||||||||||||||    
T  5641669 aagtagtctagcggctagagaaattcaccttaaaggtgaataa 5641711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 7164810 - 7164768
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    |||||||||||||| || |||||||||| ||||||||||||||    
T  7164810 aagtagtctagcggctagagaaattcaccttaaaggtgaataa 7164768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 350
Target Start/End: Complemental strand, 32344758 - 32344713
Alignment:
Q  305 gttaagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    ||||||||||||| ||| ||| ||||||||| ||||||||||||||    
T  32344758 gttaagtagtctaacggctaaggaaattcactttaaaggtgaataa 32344713  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 15680880 - 15680922
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    |||||| |||||||||| |||||||||| ||||||||||||||    
T  15680880 aagtagcctagcggttagagaaattcaccttaaaggtgaataa 15680922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 12256475 - 12256519
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataaat 352  Q
    |||||| ||||||| || |||||||||| ||||||||||||||||    
T  12256475 aagtagcctagcggctagagaaattcaccttaaaggtgaataaat 12256519  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Complemental strand, 35733490 - 35733448
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    |||||||||||||| |||||||| |||| ||||||||||||||    
T  35733490 aagtagtctagcggctaaagaaactcaccttaaaggtgaataa 35733448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 37886204 - 37886246
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    |||||||||| |||||| |||||||||| ||||||||||||||    
T  37886204 aagtagtctaacggttagagaaattcaccttaaaggtgaataa 37886246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 43027271 - 43027227
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataaat 352  Q
    ||||||||||| || || |||||||||| ||||||||||||||||    
T  43027271 aagtagtctagtggctagagaaattcaccttaaaggtgaataaat 43027227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 350
Target Start/End: Original strand, 2350354 - 2350396
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataa 350  Q
    |||||| ||||||| ||||||||||||| ||||||||||||||    
T  2350354 aagtagcctagcggctaaagaaattcactttaaaggtgaataa 2350396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 17916821 - 17916780
Alignment:
Q  306 ttaagtagtctagcggttaaagaaattcacattaaaggtgaa 347  Q
    |||||||| |||||||||  ||||||||||||||||||||||    
T  17916821 ttaagtagcctagcggttggagaaattcacattaaaggtgaa 17916780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 39172192 - 39172236
Alignment:
Q  308 aagtagtctagcggttaaagaaattcacattaaaggtgaataaat 352  Q
    |||||| |||| || ||||||||||||| ||||||||||||||||    
T  39172192 aagtagcctaggggctaaagaaattcactttaaaggtgaataaat 39172236  T

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