View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17580_high_13 (Length: 351)
Name: NF17580_high_13
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17580_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 54 - 333
Target Start/End: Complemental strand, 1452340 - 1452061
Alignment:
| Q |
54 |
gtatctttcttagtggaataaaattgaactatatacatgtatattaattagccgttacattcgattaatagaaccagatttaaaaaatatgaaaaatcat |
153 |
Q |
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| T |
1452340 |
gtatctttcttagtggaataaaattgaactatatacatgtatattaattagccgttacattcgattaatagaaccagatttaaaaaatatgaaaaatcat |
1452241 |
T |
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| Q |
154 |
tactcaatttgttgccatttaaatgnnnnnnntttggtcccctataaatatttgaacagatttacaagaatctgaacatttccaacatatattgtgtgct |
253 |
Q |
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| T |
1452240 |
tactcaatttgttgccatttaaatgaaaaaaatttggtcccctataaatatttgaacagatttacaagaatctgaacatttccaacatatattgtgtgct |
1452141 |
T |
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| Q |
254 |
agcaccannnnnnncataaggtctttggtgccagcaatattactagaattctagtggtaagaaacacaatttgattttca |
333 |
Q |
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| T |
1452140 |
agcaccatttttttcataaggtctttggtgccagcaatattactagaattctagtggtaagaaacacaatttgattttca |
1452061 |
T |
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