View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17580_high_15 (Length: 334)

Name: NF17580_high_15
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17580_high_15
NF17580_high_15
[»] chr5 (2 HSPs)
chr5 (4-324)||(33814557-33814877)
chr5 (4-136)||(33809826-33809959)
[»] scaffold0479 (1 HSPs)
scaffold0479 (4-324)||(657-977)
[»] chr4 (1 HSPs)
chr4 (7-324)||(9754277-9754594)
[»] chr3 (3 HSPs)
chr3 (4-324)||(54969170-54969490)
chr3 (12-276)||(4283994-4284255)
chr3 (266-324)||(13563709-13563767)
[»] chr7 (2 HSPs)
chr7 (4-204)||(4837504-4837704)
chr7 (233-324)||(4837703-4837794)
[»] chr6 (1 HSPs)
chr6 (5-141)||(1130083-1130219)


Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 33814877 - 33814557
Alignment:
Q  4 tcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33814877 tcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacttggggtttgggttgttctc 33814778  T
Q  104 ttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33814777 ttcagacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatc 33814678  T
Q  204 tcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttccgcagtgaaatgtacatattcac 303  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  33814677 tcttcttccatggattgtaaccatttttccttattggttgtctctatagcttccatgaagctttgaggttccccttcctcagtgaaatttacatattcac 33814578  T
Q  304 ctgagaaatatcttcttgatg 324  Q
    ||||||| |||||| ||||||    
T  33814577 ctgagaagtatctttttgatg 33814557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 136
Target Start/End: Complemental strand, 33809959 - 33809826
Alignment:
Q  4 tcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatgg-caccccttcacaacaattcgtgctttgtacctggggtttgggttgttct 102  Q
    |||||||||| || || |||| ||||||||||||||||||||||||| || |||||||||||| |||||| |||||||||| ||||| |||||||| ||     
T  33809959 tcaccaccggggaaaacattttttcaaaatcaatgcctttcttttgaagggcaccccttcacaccaattcatgctttgtacttgggggttgggttg-tcc 33809861  T
Q  103 cttcagacttg-agtttgaacacccatttattttt 136  Q
    ||| | | ||| |||||||| ||||||||||||||    
T  33809860 ctttaaaattgaagtttgaaaacccatttattttt 33809826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 4 - 324
Target Start/End: Complemental strand, 977 - 657
Alignment:
Q  4 tcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||    
T  977 tcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgttctc 878  T
Q  104 ttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatc 203  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  877 ttcagacttgagtttgaacacccatttatttttcaatgccctctttccatctggtaattttaccaggtcatacgtttcattctcctttagggattgcatc 778  T
Q  204 tcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttccgcagtgaaatgtacatattcac 303  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| ||||||   ||||| | |||||||||||    
T  777 tcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctttgtgaagtttacatattcac 678  T
Q  304 ctgagaaatatcttcttgatg 324  Q
    ||||||| |||||||||||||    
T  677 ctgagaagtatcttcttgatg 657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 324
Target Start/End: Original strand, 9754277 - 9754594
Alignment:
Q  7 ccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttc 106  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||    
T  9754277 ccaccgatgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacgactattcgtgctttgtatctgggatttgggttgttctcttc 9754376  T
Q  107 agacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctct 206  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  9754377 agacttaagtttgaacacccatttatttttcaatgccctctttccatttggcaattttaccaggtcatacgtctcattctcctttagggattgcatctct 9754476  T
Q  207 tcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttccgcagtgaaatgtacatattcacctg 306  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||    
T  9754477 tcttccatggattacaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcacctg 9754576  T
Q  307 agaaatatcttcttgatg 324  Q
    |||| |||||||||||||    
T  9754577 agaagtatcttcttgatg 9754594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 324
Target Start/End: Original strand, 54969170 - 54969490
Alignment:
Q  4 tcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctc 103  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||| ||||| ||||| ||||||||||||||    
T  54969170 tcaccaccggtgagaatatttcttcaaaatcaacgtctttcttttgatggcaccccttcacgactattcgtgccttgtatctgggatttgggttgttctc 54969269  T
Q  104 ttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatc 203  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||||    
T  54969270 ttcagacttgagtttaaacacccatttatttttcaatgccctctttccatctggtaatttgaccaggtcatacgtgtcattctcctttagggattgcatc 54969369  T
Q  204 tcttcttccatggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccccttccgcagtgaaatgtacatattcac 303  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||| | ||||| | |||||||||||    
T  54969370 tcttcttccatggattgcaaccatttttctttattggttgtctctatggcttccatgaagctttgaggttcgccttcctcggtgaagtttacatattcac 54969469  T
Q  304 ctgagaaatatcttcttgatg 324  Q
    ||||||| |||||||||||||    
T  54969470 ctgagaagtatcttcttgatg 54969490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 12 - 276
Target Start/End: Original strand, 4283994 - 4284255
Alignment:
Q  12 ggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctcttcagact 111  Q
    ||||||||| ||||||||||||||||||||||||||||||||||  ||||||| ||   ||||||||||||||| ||||||| |||||||| |||||||     
T  4283994 ggtgagaatttttcttcaaaatcaatgcctttcttttgatggcattccttcacgac---tcgtgctttgtacctagggtttgagttgttctattcagaca 4284090  T
Q  112 tgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatctcttcttc 211  Q
    |||| |||||||||| |||||||||||||||||| |||||||   |||||||||||| |||||| || |  |||||||||||||||  ||| |||||||     
T  4284091 tgagcttgaacacccgtttatttttcaatgccctatttccattcagtaattttaccaagtcatatgtttggttctcctttagggatggcatttcttcttg 4284190  T
Q  212 catggattgcaaccatttttccttattggttatctctatagcttccatgaagctttgaggttccc 276  Q
     ||| |||||| |||||||| |||||||||| ||||||| |||||||||| ||||||||||||||    
T  4284191 aatgcattgcagccatttttgcttattggttgtctctatggcttccatgatgctttgaggttccc 4284255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 324
Target Start/End: Original strand, 13563709 - 13563767
Alignment:
Q  266 ttgaggttccccttccgcagtgaaatgtacatattcacctgagaaatatcttcttgatg 324  Q
    ||||||||| ||||||  |||||| | |||||||||||||||||| |||||||||||||    
T  13563709 ttgaggttcgccttccttagtgaagtttacatattcacctgagaagtatcttcttgatg 13563767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 4837504 - 4837704
Alignment:
Q  4 tcaccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctc 103  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||| ||||||||||  |||| ||||||||||||||    
T  4837504 tcaccactggtgagaatatttcttcaaaatcaatgcctttctttcgatggcaccccttcacgactatttgtgctttgtatatgggatttgggttgttctc 4837603  T
Q  104 ttcagacttgagtttgaacacccatttatttttcaatgccctttttccatctggtaattttaccaggtcatacgtctcattctcctttagggatttcatc 203  Q
    |||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  4837604 ttcagacttgagtttgaacacccacttgtttttcaacgccctctttccatctggtaattttaccagatcatacgtctcattctcctttagggattgcatc 4837703  T
Q  204 t 204  Q
    |    
T  4837704 t 4837704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 233 - 324
Target Start/End: Original strand, 4837703 - 4837794
Alignment:
Q  233 cttattggttatctctatagcttccatgaagctttgaggttccccttccgcagtgaaatgtacatattcacctgagaaatatcttcttgatg 324  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||||| ||||||| |||||| ||||||    
T  4837703 cttattggttgtctctatggcttccatgaagctttgaggttccccttcctcagtgaagtttacatattcaactgagaagtatctttttgatg 4837794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 141
Target Start/End: Original strand, 1130083 - 1130219
Alignment:
Q  5 caccaccggtgagaatatttcttcaaaatcaatgcctttcttttgatggcaccccttcacaacaattcgtgctttgtacctggggtttgggttgttctct 104  Q
    |||||||| |||||||||||||||||||||| ||||||| |||||||||| ||||||  | ||||||||||||||||||| ||||||    |||||||||    
T  1130083 caccaccgatgagaatatttcttcaaaatcattgcctttattttgatggcgccccttagcgacaattcgtgctttgtacccggggttcaacttgttctct 1130182  T
Q  105 tcagacttgagtttgaacacccatttatttttcaatg 141  Q
    ||||||||||||||||||| ||| |||||||||||||    
T  1130183 tcagacttgagtttgaacatccaattatttttcaatg 1130219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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