View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17580_high_18 (Length: 313)

Name: NF17580_high_18
Description: NF17580
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17580_high_18
NF17580_high_18
[»] chr7 (13 HSPs)
chr7 (1-300)||(4697735-4698034)
chr7 (5-300)||(4846566-4846861)
chr7 (5-299)||(4784381-4784675)
chr7 (5-299)||(4816810-4817104)
chr7 (5-287)||(4863165-4863447)
chr7 (5-302)||(4712609-4712906)
chr7 (35-278)||(4661110-4661353)
chr7 (13-278)||(4642988-4643253)
chr7 (5-278)||(4666211-4666484)
chr7 (29-278)||(4671940-4672189)
chr7 (29-302)||(4636157-4636430)
chr7 (32-276)||(4630212-4630456)
chr7 (32-299)||(4652823-4653090)
[»] chr4 (1 HSPs)
chr4 (59-287)||(18926297-18926525)
[»] chr6 (1 HSPs)
chr6 (28-147)||(5479308-5479427)


Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 4698034 - 4697735
Alignment:
Q  1 gtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4698034 gtcgtaaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatg 4697935  T
Q  101 aactcgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaa 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4697934 aactcgtttacaccttgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaa 4697835  T
Q  201 ctccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaaccttc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4697834 ctccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaaccttc 4697735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 5 - 300
Target Start/End: Complemental strand, 4846861 - 4846566
Alignment:
Q  5 taaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaact 104  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||||| |    
T  4846861 taaactagaatcatctctgcatcttcgttgcaatatccaatgagggaaaccaagtgaatatgacgaagctgagagagcatctcgatttcattcatgaatt 4846762  T
Q  105 cgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactcc 204  Q
    | |||| ||| | | |||||||||||||   ||||||||| || ||||||||   | ||| ||||||||||||| ||||||| || ||||||||| ||||    
T  4846761 catttagaccttatcgagaacccggtttacgacgttttatcgcaacaggtgtgagtccattgatgtaacctttgtacacgttgccgaaccctccagctcc 4846662  T
Q  205 aatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaaccttc 300  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||    
T  4846661 aatgataaaaatatcttcgaagttgtttgtagcttctcttatctccgctattgtaaaatagcggcacaaatgggacggtaaagttgaggaaccttc 4846566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 4784675 - 4784381
Alignment:
Q  5 taaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaact 104  Q
    |||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || ||||||| |||||    
T  4784675 taaacgagaatcatctctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaact 4784576  T
Q  105 cgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactcc 204  Q
    |||| ||||| ||||||||||| ||||| | ||||||||| || || |||||| || |||| || ||||||||| |||| || || ||||||||||| ||    
T  4784575 cgttcacaccttgttgagaacctggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctccaacccc 4784476  T
Q  205 aatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaacctt 299  Q
     |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  4784475 gatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaacctt 4784381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 5 - 299
Target Start/End: Complemental strand, 4817104 - 4816810
Alignment:
Q  5 taaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaact 104  Q
    |||||||||||||||||| ||||||| |||||||||||||| || |||||||||||||| |||||||| |||||||||||||| || ||||||| |||||    
T  4817104 taaacgagaatcatctctacaccttcattgcaatatccaataagtgaaaccaagtgaatatgacgaagctgagagagcaactcaatctcattcaagaact 4817005  T
Q  105 cgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactcc 204  Q
    |||| ||||| ||||||||||| ||||| | ||||||||| || || |||||| || |||| || ||||||||| |||| || || ||||||||||| ||    
T  4817004 cgttaacaccttgttgagaaccaggtttaagacgttttatcgcaactggtgtaactccatcaatataacctttgtacacattgccgaaccctccaacccc 4816905  T
Q  205 aatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaacctt 299  Q
     |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  4816904 gatgataaaaatatcttcgaagttgtttgtagctgcttttatttccgctattgtaaaatagcggcacaaatgggatggtaaacttgaggaacctt 4816810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 5 - 287
Target Start/End: Original strand, 4863165 - 4863447
Alignment:
Q  5 taaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaact 104  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||||    
T  4863165 taaacgagaatcatctcctcaccttcgttgcaatatccaatgagagaaaccaagtgaatatgacgaagctgagagagtaattcgatctcattcatgaact 4863264  T
Q  105 cgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactcc 204  Q
    | |||| ||| ||||||||||| ||||| | ||||||||| || |||||| |  || |||| || ||||||||| ||||||| || ||||||||||||||    
T  4863265 catttataccttgttgagaacctggtttaagacgttttatcgcaacaggtatgtctccatcaatataacctttgtacacgttgccgaaccctccaactcc 4863364  T
Q  205 aatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaag 287  Q
    |||||| |||||||| || |||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  4863365 aatgatgaaaatatcgtcaaagttgtttgtagcagctcttatctctgttattgtaaaatagcggcacaaatgggatggtaaag 4863447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 5 - 302
Target Start/End: Complemental strand, 4712906 - 4712609
Alignment:
Q  5 taaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaact 104  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |    
T  4712906 taaacaagaatcatctctgcatcttcattgcaatatccaatgagggaaactaagtgaatatgacgaagctgagagagcaactcgatttcattcatgaatt 4712807  T
Q  105 cgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactcc 204  Q
    | |||| ||| ||| ||||||||  |||   ||||||||| || |||||| |   | |||| |||||||||||| ||||||| || || |||||||| ||    
T  4712806 catttagaccttgtcgagaacccaatttacgacgttttatcgcaacaggtatgagtccatcaatgtaacctttgtacacgttgccgaatcctccaacccc 4712707  T
Q  205 aatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaaccttcat 302  Q
     ||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| | || |||||||||||||||||| |||| ||||||||||    
T  4712706 gatgataaaaatatcttcgaagttgtttgtagcggctcttatttccactatagtaaaacatcgacacaaatgggatggtaaaattgatgaaccttcat 4712609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 35 - 278
Target Start/End: Original strand, 4661110 - 4661353
Alignment:
Q  35 caatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtttca 134  Q
    |||||||| ||||| || ||||| |||||||| ||||| || ||||||||||||||||| |||||||||||||| ||||| |||||||| |||| ||| |    
T  4661110 caatatcccatgagggacaccaaatgaatgtggcgaagctgggagagcaactcgatttcgttcatgaactcgttgacaccttgttgagagcccgatttga 4661209  T
Q  135 aacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgt 234  Q
      ||||| || || ||| ||||   | |||| |   |||||||| ||||||| ||||||||||||||||||||||| |||  ||| || ||||| |||||    
T  4661210 ggcgtttaatcgcaacaagtgttgatccatcaacacaacctttgtacacgttgccaaaccctccaactccaatgatgaaatcatcatcaaagttttttgt 4661309  T
Q  235 agcggctcttatctccgctattgtaaaatagcggcacaaatggg 278  Q
     || ||||| ||||| || |||||||| ||||||||||||||||    
T  4661310 ggctgctctgatctctgcaattgtaaagtagcggcacaaatggg 4661353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 4642988 - 4643253
Alignment:
Q  13 aatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttaca 112  Q
    |||||||||||   | |||||||||||||| | ||| || |||||||||||||| ||||| || ||||||||||||||||||||||||||||||||  ||    
T  4642988 aatcatctctgtgtcatcgttgcaatatcccacgagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcattcatgaactcgttggca 4643087  T
Q  113 ccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataa 212  Q
    || |||||||| |||| ||| |  || || |  || ||| ||||   | |||| |   |||||||| ||||||| ||||||||||||||||| |||||||    
T  4643088 ccttgttgagagcccgatttgaggcgcttaaccgcaacaagtgtggatccatcaacacaacctttgtacacgttgccaaaccctccaactccgatgataa 4643187  T
Q  213 aaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatggg 278  Q
    ||  ||| ||||||||||||||||| ||| | ||||| || ||||||||  ||||||||| |||||    
T  4643188 aagcatcatcgaagttgtttgtagctgctttgatctctgcgattgtaaaggagcggcacagatggg 4643253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 5 - 278
Target Start/End: Original strand, 4666211 - 4666484
Alignment:
Q  5 taaacgagaatcatctctgcaccttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaact 104  Q
    ||||| |||||||||||||   | || ||||||||||| |  || || |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||    
T  4666211 taaaccagaatcatctctgtgtcgtcattgcaatatcccacaagggataccaagtgaatgtggcgaagctgagagagcaattcgatttcgttcatgaact 4666310  T
Q  105 cgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactcc 204  Q
    ||||  |||| |||||||| || | ||| |  |||||||| || ||| ||||   | ||||||   |||||||| ||||||| |||||||||||||||||    
T  4666311 cgttggcaccttgttgagagcctgatttgaggcgttttatggcaacaagtgtggatccatcgacacaacctttgtacacgttgccaaaccctccaactcc 4666410  T
Q  205 aatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatggg 278  Q
     ||||| |||  ||| || ||||||||||| || ||||| ||||| || ||||||||  | |||||||||||||    
T  4666411 gatgatgaaatcatcgtcaaagttgtttgtggctgctctgatctctgcaattgtaaaggaccggcacaaatggg 4666484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 29 - 278
Target Start/End: Original strand, 4671940 - 4672189
Alignment:
Q  29 tcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccg 128  Q
    |||| ||||||||||| ||| || |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||  |||| || ||||| ||||    
T  4671940 tcgtcgcaatatccaacgagggataccaagtgaatgtggcgaagttgagagagtaactcgatttcgttcatgaactcgttggcaccttgctgagagcccg 4672039  T
Q  129 gtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagtt 228  Q
     ||| |  |||||||| || ||| ||||   | ||||||   |||||||| ||| ||| ||||||||||||||||| |||||| ||  ||| ||||||||    
T  4672040 atttgagccgttttatggcaacaagtgtggatccatcgacacaacctttgtacaggtttccaaaccctccaactccgatgatagaagcatcatcgaagtt 4672139  T
Q  229 gtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatggg 278  Q
    |||||| || ||| | ||||| || ||||||||  | |||||||| ||||    
T  4672140 gtttgtggctgctttgatctctgcgattgtaaaggaacggcacaagtggg 4672189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 302
Target Start/End: Original strand, 4636157 - 4636430
Alignment:
Q  29 tcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccg 128  Q
    |||||||||||||| |  || || |||||||||||||| ||||| || |||||||||||||| || ||||||||||| ||| |||| |||||||| ||||    
T  4636157 tcgttgcaatatcccacaagggataccaagtgaatgtggcgaagctgggagagcaactcgatctcgttcatgaactcatttgcaccttgttgagagcccg 4636256  T
Q  129 gtttcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagtt 228  Q
       | |  |||||||| || || |||||   | |||| ||| |||||||| |||| || |||||||| ||||| || || ||      ||| ||||||||    
T  4636257 acctgaggcgttttatcgcaacgggtgtggatccatcaatgaaacctttgtacacattcccaaaccccccaacaccgataatgttttcatcatcgaagtt 4636356  T
Q  229 gtttgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaaccttcat 302  Q
     ||||| || ||||| ||||| || |||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  4636357 ttttgtggctgctctgatctctgcgattgtaaagtagcggcacaaataggatggtaaagttgacgaaccttcat 4636430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 32 - 276
Target Start/End: Original strand, 4630212 - 4630456
Alignment:
Q  32 ttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtt 131  Q
    ||||||||||| |  || || |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||  |||| |||||||| || | ||    
T  4630212 ttgcaatatcctacaagggacaccaagtgaatgtggcgaagctgggagagcaactcgatttcgttcatgaactcgttggcaccttgttgagagcctgatt 4630311  T
Q  132 tcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtt 231  Q
    | |  |||||||| || ||||||||   | ||||||   |||||||| ||||||| ||||||||||||| ||| ||||| |||  ||  || ||||||||    
T  4630312 tgaggcgttttatcgcaacaggtgtggatccatcgacacaacctttgtacacgttcccaaaccctccaaatccgatgatgaaatcattgtcaaagttgtt 4630411  T
Q  232 tgtagcggctcttatctccgctattgtaaaatagcggcacaaatg 276  Q
    ||| || ||| | |||||||| |||||||| ||||| ||||||||    
T  4630412 tgtggctgctttgatctccgcgattgtaaagtagcgacacaaatg 4630456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 32 - 299
Target Start/End: Original strand, 4652823 - 4653090
Alignment:
Q  32 ttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtt 131  Q
    ||||||||||| | ||| || |||||||||||||| ||||| || ||||| |||||||| |||||||||||||||||  |||| |||||||| || | ||    
T  4652823 ttgcaatatcccacgagggataccaagtgaatgtggcgaagctgggagagtaactcgatctcattcatgaactcgttggcaccttgttgagagccagatt 4652922  T
Q  132 tcaaacgttttattgctacaggtgtaccttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtt 231  Q
    | |  |||||||| || |||||  |   | |||||||| |||||||| ||||||| ||||| |||||||| || ||||| |||| ||| |||||||| ||    
T  4652923 tgaggcgttttatcgcaacaggcatggatccatcgatgcaacctttgtacacgttgccaaatcctccaacaccgatgatgaaaacatcatcgaagttatt 4653022  T
Q  232 tgtagcggctcttatctccgctattgtaaaatagcggcacaaatgggatggtaaagttgacgaacctt 299  Q
    ||| || ||| | ||||| || ||||| ||  |||| |||||||| | ||| |||| |||||| ||||    
T  4653023 tgtggctgctttgatctctgcgattgtgaaggagcgacacaaatgtggtggcaaagatgacgaccctt 4653090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 59 - 287
Target Start/End: Complemental strand, 18926525 - 18926297
Alignment:
Q  59 tgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaacccggtttcaaacgttttattgctacaggtgtac 158  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||  | || |||||||| || ||||| | |||||||||||| || |||||      
T  18926525 tgaatgtggcgaagttgagagagcaactcgatctcattcatgaactcgttggccccttgttgagagcctggtttgagacgttttattgcaacgggtgtgg 18926426  T
Q  159 cttcatcgatgtaacctttgaacacgttaccaaaccctccaactccaatgataaaaatatcttcgaagttgtttgtagcggctcttatctccgctattgt 258  Q
     || ||||||| |||||||  ||||||| ||||||||||||||||| ||||| |||  ||| || ||||| ||||| || ||| ||||||| || |||||    
T  18926425 atttatcgatgaaacctttatacacgttgccaaaccctccaactccgatgattaaatcatcatcaaagttatttgtggctgcttttatctctgcaattgt 18926326  T
Q  259 aaaatagcggcacaaatgggatggtaaag 287  Q
    ||| ||||||||||||||||  |||||||    
T  18926325 aaagtagcggcacaaatggggcggtaaag 18926297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 147
Target Start/End: Complemental strand, 5479427 - 5479308
Alignment:
Q  28 ttcgttgcaatatccaatgagagaaaccaagtgaatgtgacgaagttgagagagcaactcgatttcattcatgaactcgtttacaccctgttgagaaccc 127  Q
    ||||||||| || ||||| | |||||| |  ||||| |||||||| |  |||||||  ||||||||||| |||||||| ||| |||| ||||| ||||||    
T  5479427 ttcgttgcagtaaccaatcaaagaaacaagatgaatatgacgaagcttcgagagcatgtcgatttcattgatgaactcattttcaccttgttgtgaaccc 5479328  T
Q  128 ggtttcaaacgttttattgc 147  Q
    ||||| |  |||||||||||    
T  5479327 ggtttaagccgttttattgc 5479308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University